Basic Information

Insect: Ophion luteus
Gene Symbol: PRDM5_1
Assembly: GCA_944452655.1
Location: CALYBV010000444.1:106547-109261[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0006 0.073 14.1 2.2 1 23 107 130 107 130 0.95

2 15 9.3e-05 0.011 16.7 2.7 1 23 137 160 137 160 0.98

3 15 0.0011 0.13 13.4 0.9 1 23 195 217 195 217 0.94

4 15 0.0032 0.39 11.8 0.8 2 23 224 246 223 246 0.97

5 15 0.00015 0.018 16.0 0.2 2 23 254 274 253 274 0.95

6 15 4.4e-05 0.0053 17.7 4.2 1 23 280 303 280 303 0.97

7 15 0.00013 0.016 16.2 1.2 2 23 504 525 503 525 0.96

8 15 1e-05 0.0013 19.7 0.8 1 23 531 553 531 553 0.97

9 15 0.28 35 5.7 2.8 1 23 560 583 560 583 0.92

10 15 4.2e-06 0.00051 20.9 2.0 1 23 589 611 589 611 0.97

11 15 0.58 71 4.7 4.4 2 20 617 635 616 639 0.82

12 15 4.4e-05 0.0053 17.7 2.1 1 23 646 668 646 668 0.95

13 15 2e-07 2.5e-05 25.1 0.9 1 23 672 694 672 694 0.99

14 15 0.027 3.3 8.9 1.1 1 23 700 722 700 722 0.94

15 15 4.2e-06 0.00051 20.9 0.6 1 23 728 750 728 750 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0006	0.073	14.1	2.2	1	23	107	130	107	130	0.95
2	15	9.3e-05	0.011	16.7	2.7	1	23	137	160	137	160	0.98
3	15	0.0011	0.13	13.4	0.9	1	23	195	217	195	217	0.94
4	15	0.0032	0.39	11.8	0.8	2	23	224	246	223	246	0.97
5	15	0.00015	0.018	16.0	0.2	2	23	254	274	253	274	0.95
6	15	4.4e-05	0.0053	17.7	4.2	1	23	280	303	280	303	0.97
7	15	0.00013	0.016	16.2	1.2	2	23	504	525	503	525	0.96
8	15	1e-05	0.0013	19.7	0.8	1	23	531	553	531	553	0.97
9	15	0.28	35	5.7	2.8	1	23	560	583	560	583	0.92
10	15	4.2e-06	0.00051	20.9	2.0	1	23	589	611	589	611	0.97
11	15	0.58	71	4.7	4.4	2	20	617	635	616	639	0.82
12	15	4.4e-05	0.0053	17.7	2.1	1	23	646	668	646	668	0.95
13	15	2e-07	2.5e-05	25.1	0.9	1	23	672	694	672	694	0.99
14	15	0.027	3.3	8.9	1.1	1	23	700	722	700	722	0.94
15	15	4.2e-06	0.00051	20.9	0.6	1	23	728	750	728	750	0.99

Sequence Information

Coding Sequence: ATGACTATCGTGAAGACCGAGTGTCCCACGGACAACGTCATCCCGCACTCGAGCGTAGCGAGGACGGGAGTGGCCGAGGTGAAGATGGAACCGTGTTGGGAAGACTACTACGGCATTGATATTCACGAGGAGTCACCGGCAGTCTTTAAAACCGAATGGCAGTTGAAAGTCGAGCCGAGTAGTCCTCCGGGATGTTTCTCCGATACGATCGAGCGGGGAAACGAGACAGGCGAATCGAACGAAGCTTCGTCTCTCGTGCAGTGCGAATGCGACGTTCAGGACAAGACGGGAAAGACGAGCGTCTCGCAGCCCAAGTACCACGAGTGTTCCATGTGCAAGGCGAAGTTCACACGCGCGAGGAGTTTGAGGGATCATCGGGCACGCATGCACCCGTCCGACCAGCCCGAGTTCGAGTGCGACCATTGCGGCTATCGTTACAGGCTCAAGAGGGATATAGCCCGTCACATGCGGCGCAATCATCTCGCTCAGCGTCTCAGCTGTATTTACTGCGGCAAACGCGTCATCTACCTGGACACACACGAGCAGCGATGTCGCGCCGGCTCGGACAACGCCACTTTCATTCACCACTGTAGGACATGTGGAAGGATATTTGACGACGAGAGCCTCCTCGCCAATCACGTGCTCGCGCATGTGCGTCAAAATTGCAGCACCTGCGACATTTGCGGCCACGTTGCCAAGGATCCCCAAAGACTCTTGCGTCACAAGCGCCGGGTCCATCCACCCGTGAAACTGATGGTTCCCTGTCCcgtctgcaagaagtcgttcacgaagaacaacttgtatcagcacgtactcgtgcactcgggcctgaggcccttcaagtgtgacgtttgcggctgcacgttcGTTCAACGCTCGACGTTCATCAATCATCGCAGGCAGAAGCACAAGGGACCTCTGCCACCCGTCAAACCCGTATCCGTCGCCAATTTGGCGAACGAGTTCATGCGACAATTCTCCAAAGACCAGTACAATCCGCTAGATCCGCTAGGCTCGACGTTTCTGACGGTTAAGTTAGGCGAAGATTACTTCCGTATGCCAAAGTCACTGACGTTGTTCATGAAGAAGCAAACGCCACCGAGGCCCAAGCAGCAACGACAGCGGGCGACGTCGACCAGCGTCGAGACGACGAACGCCAAGTTGGAGATAGACGACGAAGAATTTAAAGTCCCGAAGCACGAGGCGAAGGAAACGAGCGAGGCGAAGGAAACGAGGGAGGCAACGAGCGAGGCAACATGCGAGGCAGGTACGCCCGAAGTTGCGAAGAGCAAGCCGGACAAGTCGACGAAGGCGCAGGCGCGAAGCAGAAGCGCCAGAGCTAAGAAGAGAAACGAACGTGAGACTGTTGAGAGGAAGAACGAGACGAACGATGGGACGAGCGAGCACGACGACGAGGTCGATTATTACGACGAGTTCGACGATTTGGACGACATACCGCTCGATTACAGGCAGAAAAAAGCGAGATTCGGCAATTCGAAGAAATTGCTCACGTGCGAAATATGCTATTTGATATTCGATCGCAAGAGCAAACTCACCAGTCACATGTTCAAGCACAGTAACTCGAGGCCCCACGTGTGCACCGTTTGCTCGAAAGCCTTCAAGACCGGCGCCTATCTCACTCGACACATGGAGATACACGCGGACATCGTGCAGGAGCACGCCtgcggcctgtgcgacttcaaggcacgcaccaagccctatctcaagatacatcacatcagaaagcacacggacgactacaatttcaattgtcgcgagtgcggcaaacgcttcaaggtacaatcggactacaccacccacatgaaggatcacgacatggagtcttgcgtttgcgacatttgcggctcttcgtacaccagccgtagctcactctactttcacaagcattacaagcacaagcccaaaatcaaggagttcgagtgtctcacgtgcaagaaacgcttcaagagccaaaagaatctcaacacccacgcggaactccacaaaatgaaatacgtttgcgaacagtgcggcatggagttcaagtcgaaatacggcttgacgaaacatttgcgcactcattccggcgagaagtcttatttgtgcgctatctgcggcaaaacgttcggttgcctgagctcgcaaaagattcatctgctcacgcacgtgggcgagcgaccgtacgtatgcgacatttgcggccagagcttcactcagagatcacccatgatgctacatcggaggaaacatccgggcgtcaatccaccacCGCCACCCATCAAAATAACCAATCTCTTGCACGGCGTTCAAGACAAGATAATCGTTAACAAACACCCGCGAAAGGACGAGGCGAAGCAGGACGTGTGA
Protein Sequence: MTIVKTECPTDNVIPHSSVARTGVAEVKMEPCWEDYYGIDIHEESPAVFKTEWQLKVEPSSPPGCFSDTIERGNETGESNEASSLVQCECDVQDKTGKTSVSQPKYHECSMCKAKFTRARSLRDHRARMHPSDQPEFECDHCGYRYRLKRDIARHMRRNHLAQRLSCIYCGKRVIYLDTHEQRCRAGSDNATFIHHCRTCGRIFDDESLLANHVLAHVRQNCSTCDICGHVAKDPQRLLRHKRRVHPPVKLMVPCPVCKKSFTKNNLYQHVLVHSGLRPFKCDVCGCTFVQRSTFINHRRQKHKGPLPPVKPVSVANLANEFMRQFSKDQYNPLDPLGSTFLTVKLGEDYFRMPKSLTLFMKKQTPPRPKQQRQRATSTSVETTNAKLEIDDEEFKVPKHEAKETSEAKETREATSEATCEAGTPEVAKSKPDKSTKAQARSRSARAKKRNERETVERKNETNDGTSEHDDEVDYYDEFDDLDDIPLDYRQKKARFGNSKKLLTCEICYLIFDRKSKLTSHMFKHSNSRPHVCTVCSKAFKTGAYLTRHMEIHADIVQEHACGLCDFKARTKPYLKIHHIRKHTDDYNFNCRECGKRFKVQSDYTTHMKDHDMESCVCDICGSSYTSRSSLYFHKHYKHKPKIKEFECLTCKKRFKSQKNLNTHAELHKMKYVCEQCGMEFKSKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVNPPPPPIKITNLLHGVQDKIIVNKHPRKDEAKQDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01101518;
90% Identity: iTF_01101518;
80% Identity: -