Oobs001391.1
Basic Information
- Insect
- Ophion obscuratus
- Gene Symbol
- PRDM5
- Assembly
- GCA_964007375.1
- Location
- OZ023312.1:28354931-28358745[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00037 0.059 14.9 2.2 1 23 143 166 143 166 0.95 2 15 0.00011 0.017 16.6 2.7 1 23 173 196 173 196 0.98 3 15 4.6e-05 0.0074 17.8 0.4 1 23 231 253 231 253 0.97 4 15 0.00022 0.034 15.7 0.3 2 23 260 282 259 282 0.97 5 15 5.2e-05 0.0084 17.6 0.6 1 23 289 310 289 310 0.97 6 15 5.4e-05 0.0086 17.6 3.1 1 23 316 339 316 339 0.97 7 15 0.00015 0.024 16.2 1.2 2 23 536 557 535 557 0.96 8 15 1.2e-05 0.0019 19.6 0.8 1 23 563 585 563 585 0.97 9 15 0.33 53 5.7 2.8 1 23 592 615 592 615 0.92 10 15 4.8e-06 0.00078 20.9 2.0 1 23 621 643 621 643 0.97 11 15 0.68 1.1e+02 4.7 4.4 2 20 649 667 648 671 0.82 12 15 5.1e-05 0.0081 17.7 2.1 1 23 678 700 678 700 0.95 13 15 2.4e-07 3.8e-05 25.0 0.9 1 23 704 726 704 726 0.99 14 15 0.031 5 8.9 1.1 1 23 732 754 732 754 0.94 15 15 4.9e-06 0.00078 20.9 0.6 1 23 760 782 760 782 0.99
Sequence Information
- Coding Sequence
- ATGAACGACTACCGTTCCAATTGTCGCGAGTGCGGCGAACAAGAGTCGGACTACACTGCCCACAAGAAGAAGGACGACAAGTCTCGCAGCGCATCCTACACTGGTCCGATGACGATCGTGAAGACCGAGTGTCCCACGGACAACGTCATCCCGCACTCGAGCGTAGCGACGACGGGAGTGGCCGAGGTGAAGGTAGAACCGTGTTCGGAAGACTACTACGGCATTGATATTCACGAGGAGCCATCGGCAGTCTTTAAAACCGAATGGCAATTGAAAGTCGAGCCGAGTAGTCCGCCGGGATGTTTCTCCAATACGATCGACCGGAGAAACGAGACAGGCGAATCGAACGAAGTTTCGTCTCACGTGCACGGCGAATCCGACGTTCAGGATAAGACGGGAACGACGAGCGTCTCGCAGCCCGAGTACCACGAGTGTTCCATCTGCAAGGCGAAGTTTACACGCGCGAGGAGTTTGAGGGATCATCGGACACGCGTGCATCCGTCCGACCAGCCCGAGTTCGAGTGCGACCATTGCGGCTATCGTTACAGGCTCAAGAGGGACATTGCCCGTCACATGCGGCGCAATCATCTCGCTCAGCGTCTCAGCTGTATTTACTGCGGCAAACGCGTCATCTACCTGGACTCGCACGAGCAGCGATGTCGCGCTGGCTCGGACAACGCCACTTTCATTCACCGCTGCAGGACATGCGGAAGGATATTTGACGACGAGAGCCTCCTCGCCAATCACATGCTCGCGCATGTGCGACAAAATTGCAGCACTTGCGACATTTGCGGCCGCGTTGCCAAGGATCCCCAAAAGCTCTTGCGTCACAAGCGCCGGGTCCATCCACCCGTGAAATTGATGTTTCCCTGTCCCGTCTGCAAGAAGTCGTTCACGAAGAACAATTTGTATCAGCACGTACTCGTGCACTCGGGCCTGAGGCCCTTCAAGTGTGAAGTTTGCGGCTGCGCGTTCGTTCAACGCTCGACGTTCATCAATCATCGCAGGCAAAAGCACAAGGGACCCCTGCCACCCATCAAACCCGTATCGGTCGCCGATTTGGCGAACGAGTTCATGCGACAATTCTCCAAAGACCAGTACAATCCGCTAGATCCGCTAGGCTCGACGTTTCTGACGGTTAAGTTAGGCGAAGATTACTTCCGTATGCCAAAGTCACTGACGTTGTTCATGAAGAAGCAAACGCCACCGAGCCCCATGCAGCAACGACAGCAGGCGACCCCGAGCAGCGTCGAGACGACGAACGCCAAGTTGGAGATAGACGACGAAGAATTTAAAGTCCCGAAGCACGAGGCGAAGGAAACGAGCGAGGCGAAGGAAACGAGCAAGGCAACGAGCGAGGCGGTTACGCTCGAAGTTGCGCAAAGCAAGCCGGACAAGTCGACGAAGGCGGAGGCGCGAAGTAGAAGCGCCCGAGCGAAGAAGAGAAACGAACGTGAGCCTGTTGAGAGGAAGAACGAGACGAACGATGTGACGAGCGAGCACGACGACGAGGTCGATTATTACGACGAGTTCGACGATTTGGACGACATACCGCTCGATTACAGGCAGAAAAAAGCGAGATTCGGCAATTCGAAGAAATTACTCACGTGCGAAATATGCTATTTGATATTCGATCGCAAGAGCAAACTCACCAGTCACATGTTCAAGCACAGTAACTCGAGGCCCCACGTGTGCACCGTTTGCTCGAAGGCCTTCAAGACCGGCGCTTATCTCACTCGACACATGGAGATACACGCGGACATCGTGCAGGAGCACGCCTGCGGCCTGTGCGACTTCAAGGCACGCACCAAACCCTATCTCAAGATACATCACATAAGAAAGCACACGGACGACTACAATTTCAATTGTCGCGAGTGCGGCAAACGCTTCAAGGTACAATCGGACTATACCACCCACATGAAGGATCACGACATGGAGTCTTGCGTTTGCGACATTTGCGGCTCTTCGTACACCAGCCGTAGCTCACTATACTTTCACAAGCATTACAAGCACAAGCCCAAAATCAAGGAGTTCGAGTGCCTCACGTGCAAGAAACGCTTCAAGAGCCAAAAGAATCTCAACACCCACGcggaacttcacaaaatgaaATACGTTTGCGAACAGTGCGGCATGGAGTTCAAGTCGAAATACGGCCTGACGAAACATTTGCGCACTCATTCCGGCGAGAAGTCTTATCTGTGCGCTATATGCGGCAAAACGTTCGGTTGCCTGAGCTCGCAAAAGATTCATCTGCTCACGCACGTAGGCGAGCGACCGTACGTATGCGACATTTGTGGCCAGAGCTTCACACAGAGATCACCCATGATGCTACATCGGAGGAAACATCCGGGCGTGAATCCACCACCGCCACCCATCAAAATAACAAATCTCTTGCACGGCGTTCAAGACAAGATAATCGTTAACAAACACCCGCGAAAGGACGAGGCGAAGCAGGACGTGTGA
- Protein Sequence
- MNDYRSNCRECGEQESDYTAHKKKDDKSRSASYTGPMTIVKTECPTDNVIPHSSVATTGVAEVKVEPCSEDYYGIDIHEEPSAVFKTEWQLKVEPSSPPGCFSNTIDRRNETGESNEVSSHVHGESDVQDKTGTTSVSQPEYHECSICKAKFTRARSLRDHRTRVHPSDQPEFECDHCGYRYRLKRDIARHMRRNHLAQRLSCIYCGKRVIYLDSHEQRCRAGSDNATFIHRCRTCGRIFDDESLLANHMLAHVRQNCSTCDICGRVAKDPQKLLRHKRRVHPPVKLMFPCPVCKKSFTKNNLYQHVLVHSGLRPFKCEVCGCAFVQRSTFINHRRQKHKGPLPPIKPVSVADLANEFMRQFSKDQYNPLDPLGSTFLTVKLGEDYFRMPKSLTLFMKKQTPPSPMQQRQQATPSSVETTNAKLEIDDEEFKVPKHEAKETSEAKETSKATSEAVTLEVAQSKPDKSTKAEARSRSARAKKRNEREPVERKNETNDVTSEHDDEVDYYDEFDDLDDIPLDYRQKKARFGNSKKLLTCEICYLIFDRKSKLTSHMFKHSNSRPHVCTVCSKAFKTGAYLTRHMEIHADIVQEHACGLCDFKARTKPYLKIHHIRKHTDDYNFNCRECGKRFKVQSDYTTHMKDHDMESCVCDICGSSYTSRSSLYFHKHYKHKPKIKEFECLTCKKRFKSQKNLNTHAELHKMKYVCEQCGMEFKSKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVNPPPPPIKITNLLHGVQDKIIVNKHPRKDEAKQDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01101518;
- 90% Identity
- iTF_01101518;
- 80% Identity
- -