Ocos014769.1
Basic Information
- Insect
- Ophion costatus
- Gene Symbol
- NEGR1
- Assembly
- GCA_951751655.1
- Location
- OX632362.1:599220-646444[-]
Transcription Factor Domain
- TF Family
- CSL
- Domain
- BTD domain
- PFAM
- PF09270
- TF Group
- Beta-Scaffold Factors
- Description
- Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0045 60 4.3 0.0 44 96 37 89 17 109 0.87 2 2 8.6e-08 0.0011 19.5 0.0 29 72 156 202 152 231 0.79
Sequence Information
- Coding Sequence
- ATGTGCGGTCTCGTTAAGAATGTTAGATTCGACCTTCGCGTGACCTTGGAAGAGCCGAACTTCAAAGAACCCATCAAGAACGAGACTGCTCCAGTCGGTCGCGAAGCTATACTTGCCTGCGTGGTGCAGGATCTCGCGATCTACAAAGTAGCCTGGCTTCGAGTCGACACTCAAACGATTCTGACGATAGCGAATCACGTGATCACGAAGAATCATCGAATAGCCGTTACCCACAGCGATCATCGTACGTGGTTCCTCCACATACGGGAGGTCAGGGAGTCCGATCGCGGATGGTACATGTGTCAGATCAATACGGATCCCATGAAGAGTCAGAACGGCTATCTCGACGTTGTCGACGGCTCGCGGCTCGATCGCTTTCCGTACCAGAATCACCACAGCCTGGGTGGCGCACTTCCGCCCTCCGGCGCGAGCTTCAACGTACCTGTACCACCGGATATAATCGACGATCAAACGAGCACGGACATGGTCGCGAGAGAAGGAAGCAACGTGACACTTTCCTGTGCCGCAACTGGGTCGCCAACTCCAAATATAATCTGGCGACGCGAAGACAATCAAAAGATTCTCCTCGATAATGGACAAAAAGAAAACACCGTCGAGGGCGCAAATCTCAACATAACAAAAGTGAATCGACTACATATGGGACCATATTTGTGTATTGCATCGAACGGCGTTCCACCATCCGTCAGTAAAAGGATCAAGCTAATCGTGCAGTTTGCGCCGATGATTTGGATTCAGAATCAGCTGGTAGGTGCCCAACTCGGTCAGGCAATGACGCTCGAGTGCCATTCGGAGGCTTATCCAAAATCGATAAACTACTGGACGAGggacaaaaatgaaatcgtcGCTCAAGGTGGAAAATACGAGACTGAGCTAATCGACAACACGTACAAGGTTCGCATGAAGCTGACCATACGCTCGGTCACGGAAAATGATTACGGAGCGTACAAGTGTGTTTCAAGAAATTCTCTGGGTGACACGGACGGCAGTATCAAGCTTTACAAAATATCATCATCGTCAGGGTCCCACTATCCTTACGGTAATGGAACGAAGTACAAAGGCAAGCTGAAGAAAAATACCGGAAACAATATCCTTGAGGGAAATCAGGACATGCTGAAGGAGAGAGACTTAAAGCTTCGTGGACGAAAGGACAACGATGAAAACGAGAACGACGAGGATTACGAGGATTCCATCGCTTCGAGCACGAGAAGTTCTTCGGGCAATAATAATCTCGCCATCGTCGCCGttggatttttatctcttctctgcCTAAACCATCACTTGCATCATCATGATTGTCATTGTCGTCCGTTATTTCGAACTCTCCAATCTGTTTGA
- Protein Sequence
- MCGLVKNVRFDLRVTLEEPNFKEPIKNETAPVGREAILACVVQDLAIYKVAWLRVDTQTILTIANHVITKNHRIAVTHSDHRTWFLHIREVRESDRGWYMCQINTDPMKSQNGYLDVVDGSRLDRFPYQNHHSLGGALPPSGASFNVPVPPDIIDDQTSTDMVAREGSNVTLSCAATGSPTPNIIWRREDNQKILLDNGQKENTVEGANLNITKVNRLHMGPYLCIASNGVPPSVSKRIKLIVQFAPMIWIQNQLVGAQLGQAMTLECHSEAYPKSINYWTRDKNEIVAQGGKYETELIDNTYKVRMKLTIRSVTENDYGAYKCVSRNSLGDTDGSIKLYKISSSSGSHYPYGNGTKYKGKLKKNTGNNILEGNQDMLKERDLKLRGRKDNDENENDEDYEDSIASSTRSSSGNNNLAIVAVGFLSLLCLNHHLHHHDCHCRPLFRTLQSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057404;
- 90% Identity
- -
- 80% Identity
- -