Otau010259.1
Basic Information
- Insect
- Onthophagus taurus
- Gene Symbol
- Trl
- Assembly
- GCA_000648695.2
- Location
- NW:2686645-2688485[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.33 2.3e+03 -1.6 0.2 5 19 157 165 154 177 0.59 2 3 9.9e-15 6.8e-11 41.8 0.5 10 44 236 270 232 274 0.95 3 3 1.8 1.2e+04 -3.9 0.0 18 29 315 326 314 328 0.80
Sequence Information
- Coding Sequence
- ATGGCCTCAAATCCTTTATATAACTTAACTTGGGGTGAGTATGGAACATCTTTGATCTCTGCAGTGCAACTTCTTCGCTGTCAAGACGAATTGGTTGATGTAACTTTGGCTGCTGGTGGTAGAACTTTTCATGCACACAAAGTTGTTTTATGTGCTGCCAGTCCATTTCTTTTGGATCTACTCAAAaGCACATCTTGTAAACATCCTGTAGTGATGTTAGCCGGGGTTCAAGCTTCCGATTTAGAAGCACTTTTGGAATTTGTGTATCGAGGTGAAGTCAGCGTGGATTCTAGTCAATTACCATCATTGCTACAAGCAGCTCATTGTTTAAATATACAAGGATTATCTCCTGCTCAATCAGAAAGTGTAAATAGCTTAAAAACTACAccaaataAAACCCAAGAATTGACTCAGTCTCAAGCAACTCAAAGTAGTCAGGAAGATGAGAACGTTTTGAGAAGAAAAAAACGAGCTAAAAGACCTAGAAGTCCTTCTTTACAAACTCAAACAGCGAAATGGTCGAAAGTTTACGTCCAAACAGATGGAAACAATGTTTTAGTTAATAATGAAGATAATTTGTCTCCTTCTTGGTCTCAACAAATGAATCTAGTCAATGTAACAACAGCAACTTCTCCTATTACAAGTTTACCAATTCAAACTCCTATTCTTGTACAAAATATACCGGTatcgataaataataatacatcgGGTACAACTCCACCTAAAATTCGAGGTGCTTCCGATCAGCCagGTTCTTGCCCTTTGTGTGGTGCAATGTTAAGGCAAGCAAGAAATTTACGTAGACATCTTATAACGAGTTGCAAATATCGTAGTTTAGGAACTCAGCCTTCTCAACACATAGAAAGAACTTCGAATGGAACTCTCCATCAATTACAAACGATACCTTTGCACAACGTAGAGAGGGTCACACAAAATATCGAACGAATTGATAGTAAACAAATGGCTTTAGCTCCAATTTCTTGTAATGATTTATTGCCATCAACGTCTAGTATTATTACAATGGCTTCAAGTATGCAATAA
- Protein Sequence
- MASNPLYNLTWGEYGTSLISAVQLLRCQDELVDVTLAAGGRTFHAHKVVLCAASPFLLDLLKSTSCKHPVVMLAGVQASDLEALLEFVYRGEVSVDSSQLPSLLQAAHCLNIQGLSPAQSESVNSLKTTPNKTQELTQSQATQSSQEDENVLRRKKRAKRPRSPSLQTQTAKWSKVYVQTDGNNVLVNNEDNLSPSWSQQMNLVNVTTATSPITSLPIQTPILVQNIPVSINNNTSGTTPPKIRGASDQPGSCPLCGAMLRQARNLRRHLITSCKYRSLGTQPSQHIERTSNGTLHQLQTIPLHNVERVTQNIERIDSKQMALAPISCNDLLPSTSSIITMASSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01098152;
- 90% Identity
- iTF_01098152;
- 80% Identity
- iTF_01098606;