Osag021909.1
Basic Information
- Insect
- Onthophagus sagittarius
- Gene Symbol
- Trl
- Assembly
- GCA_036711965.1
- Location
- JASERS010000004.1:44343524-44344793[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.33 8.5e+03 -1.6 0.2 5 19 157 165 154 177 0.59 2 3 6.4e-14 1.6e-09 39.2 0.6 12 44 238 270 233 274 0.93 3 3 1.8 4.6e+04 -3.9 0.0 18 29 315 326 314 328 0.80
Sequence Information
- Coding Sequence
- ATGGCCTCAAATCCTTTATACAACTTAACTTGGGGTGAGTACGGAACATCTTTGATCTCTGCAGTACAACTTCTTCGCTGTCAAGACGAATTGGTTGATGTAACTTTGGCTGCTGGTGGCAGAACTTTCCACGCACACAAAGTTGTTTTATGTGCTGCCAGCCCGTTTCTTTTGGATCTACTCAAAAGTACATCATGTAAACATCCCGTAGTGATGTTAGCTGGGGTTCAAGCATCCGATTTAGAAGCACTTTTGGAATTTGTGTATAGAGGTGAAGTCAGTGTGGATTCTAGTCAATTACCATCATTATTACAAGCAGCTCATTGCTTAAATATACAAGGATTATCTCCTGCTCAATCAGAAAGTGGAAATACCTTAAAAACTTCACCAAATaaaaccCAAGAATTGAGTCAGTCTCAAACAACCCAAAGCAATCAGGAAGATGAGAATGTTTTGAGAAGGAAGAAACGAGCCAAAAGACCAAGAAGTCCTTCTTTACAAACTCAAACGGCGAAATGGTCGAAAGTTTACGTCCAAACTGATGGGAATAATGTTTTagttaataatgaagataatttgTcTCCTTCTTGGTCTCAACAAATGAATCTAGTCAATGTAACAACAGCAACCTCCCCTATTACTAGTTTACCAATTCAAACTCCAATTCTTGTACAAAATATACCGGTATCGATAAATAATAATACATCGGCTACAACTCCACCTAAAATTCGAGGCGCTTCTGATCAACCAGgTTCTTGTCCTTTGTGCGGCGCAATGTTAAGGCAAGCCAGAAATTTACGCAGACATCTTATAACCAGTTGCAAGTATCGTAGCTTAGGAACTCAGCCTTCTCAACACATAGAAAGAACTTCGAACGGAACTCTCCATCAATTACAAACGATACCTTTGCACAACGTCGAGAGGGTCACGCAAAATATCGAACGAATTGATAGCAAACAAATGGCGTTGGCTCCAATTTCTTGCAACGATTTATTGCCATCAACATCTAGTATTATTACAATGGCTTCAAGCATGCAATAA
- Protein Sequence
- MASNPLYNLTWGEYGTSLISAVQLLRCQDELVDVTLAAGGRTFHAHKVVLCAASPFLLDLLKSTSCKHPVVMLAGVQASDLEALLEFVYRGEVSVDSSQLPSLLQAAHCLNIQGLSPAQSESGNTLKTSPNKTQELSQSQTTQSNQEDENVLRRKKRAKRPRSPSLQTQTAKWSKVYVQTDGNNVLVNNEDNLSPSWSQQMNLVNVTTATSPITSLPIQTPILVQNIPVSINNNTSATTPPKIRGASDQPGSCPLCGAMLRQARNLRRHLITSCKYRSLGTQPSQHIERTSNGTLHQLQTIPLHNVERVTQNIERIDSKQMALAPISCNDLLPSTSSIITMASSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01098858; iTF_01098606; iTF_01097655;
- 90% Identity
- iTF_01098858; iTF_01098606; iTF_01097655;
- 80% Identity
- iTF_01097655;