Basic Information

Gene Symbol
-
Assembly
GCA_963969525.1
Location
OZ018395.1:18167524-18172040[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.9e-05 0.035 17.0 2.4 1 23 407 429 407 429 0.97
2 18 6.1e-05 0.021 17.7 1.8 1 20 435 454 435 457 0.94
3 18 7.4e-06 0.0026 20.6 1.4 1 23 463 485 463 485 0.98
4 18 3.8e-06 0.0013 21.5 4.4 1 21 491 511 491 513 0.95
5 18 3e-05 0.01 18.7 4.6 1 23 519 541 519 541 0.99
6 18 3e-05 0.01 18.7 5.3 1 23 547 569 547 569 0.97
7 18 3e-07 0.00011 25.0 5.0 1 23 575 597 575 597 0.98
8 18 1.1e-07 3.9e-05 26.3 2.7 1 23 603 625 603 625 0.98
9 18 8.2e-05 0.029 17.3 6.7 1 23 631 653 631 653 0.97
10 18 1.3e-05 0.0047 19.8 5.5 1 23 659 681 659 681 0.97
11 18 5.3e-07 0.00018 24.2 2.8 1 23 687 709 687 709 0.98
12 18 7.4e-06 0.0026 20.6 7.9 1 23 715 737 715 737 0.98
13 18 3.2e-05 0.011 18.6 9.1 1 23 743 765 743 765 0.98
14 18 1.9e-05 0.0067 19.3 7.7 1 23 771 793 771 793 0.98
15 18 2.7e-05 0.0094 18.8 7.6 1 23 799 821 799 821 0.97
16 18 5.8e-05 0.02 17.8 0.8 1 23 827 849 827 849 0.98
17 18 0.029 10 9.3 5.1 1 23 859 881 859 881 0.98
18 18 6.7e-07 0.00023 23.9 1.2 1 23 887 909 887 909 0.97

Sequence Information

Coding Sequence
ATGAATTCCGATGAAGTCGTCCCCCTACCAGGGGCGCATCATAACACCGAAAACGACGATAACACACAAAGGCCTCCCTCCTCAACAAGCGCAGCCACTGACCTACGTGTGAATACAACGGCCTTAAACGCTGTTGCTCTGAGTAGTGTAGCCAAGTATTGGGTGCTGACTAATTTGCTACCTGGTCCCATACCACAAGTCTCTGTTTACGGTTTGCCTGGAGCAGCAAGGCCTGACGCACAAGGCAAAATCCCACAGGATCCCATGTCGATTCCCCAACACGGGGGACTAATCCCACCTGAAAATCTATTGCTCTCGCACAACCCACAGATACCTGTCTCTATGCCCTCGAATATACCAACTTCTAGTGCAATGCATTTAGACTCACAACAACAAAATGGTGCTAGCCACAATCATCACCAACAATCCGAAAATCAGTCAATGATATCACAATCCCAACAAAATCAGATGCAGCAGTCTCAACAACAACAGCAACAAcaacagcagcagcagcagcaacaacaacaacaacaaacccAAAACATGGTCCAAGTACAAGTACAGGATAATTTAGTTTCTGTCATTGATGATAATAAAGAGCAAAAGGATATGTTGGCTAATCAGATAGCTCAGGCTCAGATGCATTTGAATGAGAACCAGCAGATGGGTCAACAGGGGCTAACAGTTCAACAACTGCAGCATATGCAAGTTCAACAAGTCTTGGATAATGTTGTGAGATTAGAGTCTAATGAGCAGGGAcagaataataatgaaaatttgtcTGAAAATATGCAGGTCAAGGATGAAAAAGTTCTGCAGAACTGTACCAAGTTGCTCAGTGCGCAATTTGGTTTACAAGATGTTAAAGCATCTCTTATGGATGTTCGAACCGCTGATGGGAATATAGTTAAGATTTCAACAGGTCTACAAGATCAAGATTTAGCGAAAACAATAGGAGTTGAAATGGTGCAAAATATGTACAAAGTGAATGTCGACGACATCAACCAGTTATTGGCCTACCATGAAGTTTTTGGAAAGCTGCAAGGGGAAATAACTGGGGGATCGAATAATCTGGTACAGACTTCAAATGCCAGTGTGAACTTACAGGGTAGTGTTGTAAATAATATTGCAGTTGTGCCCAAAGTTCTGGAAAATGAAGGAGAGGCATCCACAAGTGGAATGAGCAATGACAGTCCTCCAAGTGTTATTAcggGGACTCATGTGTGTGATCTTTGTGGAAAGATGTTTCAATTTCGTTACCAGCTGATAGTGCACAGGAGGTATCATACAGAACGGAAACCATTCACGTGTCAGGTGTGCGGGAAAGCGTTTACCAATGCAACAGAACTGAGTCGACACGGGAAGTGTCATTTAGGTGGTAGTATGTTTACGTGTACAGTTTGTTTTCATGTGTTCGCGAATGCGGCTAGTTTAGAAAGACACATGAAAAGGCACTCGACTGACAAGCCTTACACGTGCACTATATGTGGAAAATCCTTTGCTCGTAAGGAGCATTTGGAGAATCATACTCGGTGCCATACGGGTGAGACACCATATCGGTGCCAGTATTGTGCAAAAACATTTACTAGGAAGGAACACATGGTAAACCATGTGAGGAAACACACTGGGGAAACTCCTCATCGGTGTGATATATGCAAGAAGTCATTTACTAGGAAAGAGCACTTCATGAATCATGTGATGTGGCATACCGGAGAGACTCCACATCAGTGTACGATATGTGGGAAGAAGTACACTAGGAAAGAGCATTTAGCGAATCACATGAGGTCCCACACGAATGATACACCATTTAGGTGTGAAATCTGTGGAAAGTCCTTTACAAGGAAGGAACACTTTACGAATCACATAATGTGGCACACAGGAGAAACACCACATCGCTGTGATTTCTGTTCGAAAACCTTCACCCGCAAAGAGCACCTTCTAAATCATGTGCGGCAGCACACGGGTGAATCACCTCATCGGTGTGCCTATTGTTCAAAATCCTTCACCAGGAAAGAACACCTTATCAACCATGTAAGGCAACATACGGGAGAAACCCCTTTCCGCTGCAGTTATTGCCCAAAAGCTTTCACAAGGAAAGATCATTTAGTTAATCATGTTAGGCAACATACTGGCGAATCTCCCCATAAGTGCACTTACTGTACAAAAAGTTTCACAAGGAAGGAACACCTTACCAACCATGTAAGGCAGCACACAGGGGAATCTCCGCATAGATGCCACTTTTGCTCAAAAAGCTTCACCAGGAAAGAGCACCTCACAAACCATGTTAGGATACATACAGGGGAATCTCCTCATCGGTGTGAATTTTGCCAGAAGACTTTCACCAGAAAGGAGCATCTGACGAATCATCTGAGGCAGCACACAGGAGAAACACCTCATTGTTGTAACCTGTGCTCAAAGCCTTTTACAAGGAAAGAGCACTTGATTAATCACATGAGGTCACATACAGGCGAACGTCCATTCTCGTGTACCGAGTGTGGGAAGTCCTTCCCGTTGAAAGGGAATTTGCTGTTTCATCAAAGGTCGCATAATAAGGGAGCAGCTGCTGAGAGGCCGTTTAGATGCGATTTGTGTGATAAGGACTTCATGTGTAAGGGACATCTAGTGTCACACAGGAGGTCGCATAGTGGAGAAAAGCCGCATATGTGTCCTGACTGTGGTAAGACCTTTGTAGAAAAGGGTAATATGTTAAGACATTTACGGAAACATGGTACGGATAATCTCCCGGGCCCTGCTGCCGGACAGGAAGGTAATCCACCTCAACCAGCTTCATCCACCACACCTCAAACGAGTGCGGCAAATGTGCAATTACCCCAAGTCTCCCAGGCCAATTCGATGGCCAGCCCCGTGACTACAGGTTCAATAGTGCCACAAACTATGAACATGCACCCCCAGACTACACACCCCGTTGTTGTACCGACCGCCAACGGTAACGTCCTTGCCACCTACTGA
Protein Sequence
MNSDEVVPLPGAHHNTENDDNTQRPPSSTSAATDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGAARPDAQGKIPQDPMSIPQHGGLIPPENLLLSHNPQIPVSMPSNIPTSSAMHLDSQQQNGASHNHHQQSENQSMISQSQQNQMQQSQQQQQQQQQQQQQQQQQQTQNMVQVQVQDNLVSVIDDNKEQKDMLANQIAQAQMHLNENQQMGQQGLTVQQLQHMQVQQVLDNVVRLESNEQGQNNNENLSENMQVKDEKVLQNCTKLLSAQFGLQDVKASLMDVRTADGNIVKISTGLQDQDLAKTIGVEMVQNMYKVNVDDINQLLAYHEVFGKLQGEITGGSNNLVQTSNASVNLQGSVVNNIAVVPKVLENEGEASTSGMSNDSPPSVITGTHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNATELSRHGKCHLGGSMFTCTVCFHVFANAASLERHMKRHSTDKPYTCTICGKSFARKEHLENHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCSKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNLCSKPFTRKEHLINHMRSHTGERPFSCTECGKSFPLKGNLLFHQRSHNKGAAAERPFRCDLCDKDFMCKGHLVSHRRSHSGEKPHMCPDCGKTFVEKGNMLRHLRKHGTDNLPGPAAGQEGNPPQPASSTTPQTSAANVQLPQVSQANSMASPVTTGSIVPQTMNMHPQTTHPVVVPTANGNVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
-
80% Identity
-