Opun045419.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- -
- Assembly
- GCA_951805005.1
- Location
- OX638144.1:31432744-31444191[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00013 0.021 17.0 2.4 1 23 400 422 400 422 0.97 2 18 0.00025 0.041 16.1 1.3 1 20 428 447 428 450 0.93 3 18 9.7e-06 0.0016 20.6 1.4 1 23 456 478 456 478 0.98 4 18 7.4e-06 0.0012 21.0 4.3 1 21 484 504 484 506 0.95 5 18 0.0002 0.032 16.5 4.7 1 23 512 534 512 534 0.99 6 18 3.9e-05 0.0064 18.7 5.3 1 23 540 562 540 562 0.97 7 18 5.8e-06 0.00094 21.3 5.9 1 23 568 590 568 590 0.98 8 18 1.5e-07 2.4e-05 26.3 2.7 1 23 596 618 596 618 0.98 9 18 0.00011 0.018 17.3 6.7 1 23 624 646 624 646 0.97 10 18 9e-05 0.015 17.5 5.7 1 23 652 674 652 674 0.97 11 18 6.9e-07 0.00011 24.2 2.8 1 23 680 702 680 702 0.98 12 18 9.8e-06 0.0016 20.6 7.9 1 23 708 730 708 730 0.98 13 18 4.2e-05 0.0068 18.6 9.1 1 23 736 758 736 758 0.98 14 18 2.5e-05 0.0041 19.3 7.7 1 23 764 786 764 786 0.98 15 18 1.6e-05 0.0027 19.9 7.1 1 23 792 814 792 814 0.97 16 18 5.1e-05 0.0082 18.3 0.9 1 23 820 842 820 842 0.98 17 18 0.038 6.2 9.3 5.1 1 23 852 874 852 874 0.98 18 18 2.4e-06 0.00039 22.5 0.8 1 23 880 902 880 902 0.96
Sequence Information
- Coding Sequence
- ATGAATTCTGATGAAGTCGTCCCCCTCGCCGGGGCGCATCGTAACACCGAGAACGACGAAAATACACAAAGGCCTCCCCCCTCGACAACCGCAGCCACTGACCTCCGGGTGAACACGACAGCTCTTAACGCTGTAGCGCTAAGTAGTGTAGCTAAGTATTGGGTGTTAACTAATTTGCTGCCCGGTCCCATCCCGCAAGTCTCGGTTTACGGACTGCCCGGAGCCCCGAGGGCCGACTGCCAAGGGAAGCTGCCTCAGGAACAGATGCTCTCCCACCATGGGGGCCTAATCCCGCCTGAAAACTTGCTCCTCCCGCACAACCCCCAAATCCCTACGTCTATCCCCTCGAGCCTCGCCTTATCATCGAGTACAATGCACATCGACTCACAAACTCAGGGCGGCGCAGGTCACACTCAGCACTCCAACCACCAGCCCGACAACCAGCCAATGGTCTCGCAACCGCAGCAAAATCAACACATGCAACAACAGCAGCAACAacaacagcagcagcagcagcagcagcagaaTCAGAACCAGAACATGGTACAGGTGCAAGTGCAGGACAACCTGGTGTCCGTCATCGAGGACAGCAAGGAACAGAAGGACCTGCTCGCAAGCCAGCTCGCGCAGGCGCAGCTGCACCTCAGTGAGAACCAGCAGGCCTTGGCAGTCCAGCAACTGCAGCAGCTCCAGGTGCAGCACGTGCTCGACAACGTGCGCATCGAGAACAGCGAGCAGGGGCAGAACAATGTTGGGCACCTGCATGACAACCTGCAGATCAAGGACGAGAAGGTGCTACAGAACTGCACGAAGCTGCTCAGTGCCCAGTTCGGTCTGCACGACGTCAAGGCTAATCTCATGGACGTTCGAACCGCTGACGGgagtattgttaaaatttctgcaGGTTTGCAGGACCAGGACTTGGCGAAGAGTCTGGGTGTTGAAATGGTACAAAACATGTACAAAGTGAACGTCGACGATATCAACCAGCTGCTAGCGTACCACGAGGTTTTCGGTAAGCTCCAGGGAGAGATCACGGGCGCGGCGGGGAACCTGGTGCCGTCTTCCAACCCGAACGTCAACATTCAGGGGAGCGTCGTGAACAACATAGTCGTACCGAAGGGGATGGAGAACGACCCGGAGGCGTCGACCAGCGGTATGAATTCTGACTGTCCGCCAGCAGTCATCACAGGTACCCATGTCTGCGACCTGTGCGGGAAGATGTTTCAGTTCCGCTACCAGCTCATAGTGCACCGGCGGTACCACACTGAGAGGAAGCCGTTCACGTGCCAGGTGTGCGGTAAGGCATTCACGAACGCCACCGAGCTGGGGCGGCACGGCAAGTGCCATCTGGGTGGCAGCATGTTCACGTGCACGGTTTGCTTCCACGTATTTGCTAACGCCGCCAGCCTTGAGAGGCACATGAAGCGCCATTCGACAGACAAGCCATACTCTTGCACGATATGCGGCAAGTCGTTTGCCAGGAAGGAGCACCTGGAGAACCACACCAGGTGCCATACGGGCGAGACCCCATACCGGTGCCAGTTCTGTGCTAAGACATTTACTCGCAAGGAGCACATGGTCAACCACGTACGGAAGCACACCGGCGAGACTCCCCACAGAtgtgatatttgtaaaaaatcaTTTACTAGGAAAGAACACTTTATGAATCACGTCATGTGGCATACGGGCGAGACTCCTCATCAGTGCACCATTTGTTCAAAGAAGTATACAAGGAAGGAGCATCTTGCCAACCATATGAGATCCCATACTAATGACACACCATTCCGATGTGAGATTTGCGGTAAATCGTTTACAAGGAAAGAGCACTTCACGAACCACATAATGTGGCACACGGGCGAGACGCCTCACCGGTGCGACTTCTGCTCGAAGACGTTCACCCGCAAGGAGCACCTGCTGAACCACGTGCGGCAGCACACTGGTGAGTCGCCGCACCGATGTGCCTTCTGCTCGAAGTCGTTCACCAGAAAGGAGCACCTGATAAACCATGTGCGGCAGCACACAGGGGAGACACCTTTCAGGTGCAGCTACTGCCCGAAGGCGTTCACCCGCAAGGACCACCTTGTGAACCACGTGCGGCAGCACACAGGCGAGTCGCCACACAAGTGCACGTATTGCACCAAAAGTTTTACCCGCAAGGAACACCTGACGAACCACGTGCGGCAGCACACGGGCGAGTCGCCGCACCGGTGCCACTTCTGCTCGAAGAGCTTTACCCGCAAAGAACACCTGACGAACCATGTGCGGATACACACTGGTGAGTCGCCGCACCGGTGCGAGTTCTGCCAGAAGACGTTCACGCGGAAGGAGCACCTGACGAACCACCTCAGGCAACACACCGGTGAGACGCCGCACTGCTGCAACGTGTGTTCGAAGCCGTTCACCAGGAAGGAGCACCTGATCAACCACATGCGGTCCCACACAGGTGAGCGCCCGTTCACGTGCACCGAGTGTGGCAAGTCGTTCCCGCTCAAGGGGAACCTGCTGTTCCACCAGCGATCGCACAACAAGGGCGCGGGAGCTGAGAGGCCGTTCCGGTGCGACCTATGCGACAAAGACTTTATGTGCAAGGGGCACCTGGTGTCTCACCGGAGATCGCATAGTGGGGAAAGGCCCCATGCCTGTCCTGACTGTGGGCGGACGTTCGTTGAAAAAGGAAATATGTTACGTCATTTACGTAAACACACGACGGAAAACCTCCAGGGGGCGGCCAGCGCCCAGCAGGAGGGCAACCAGCCACAGCCGACTTCCTCAGCGACGCCGCAGACGAGCGTGGCGAACGTGCAATTGCCGCAGGTCTCTCAGGCGACGTCAATGTCGAGCCCCGTGACGACGGGATCGATCATGCAGCAAGCACTGAGCATGCACCCGCAGCCGTCGCACCCCGTCGTAGTGCCCACAGCCAATGGAAACGTACTTGCCACTTACTGA
- Protein Sequence
- MNSDEVVPLAGAHRNTENDENTQRPPPSTTAATDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGAPRADCQGKLPQEQMLSHHGGLIPPENLLLPHNPQIPTSIPSSLALSSSTMHIDSQTQGGAGHTQHSNHQPDNQPMVSQPQQNQHMQQQQQQQQQQQQQQQNQNQNMVQVQVQDNLVSVIEDSKEQKDLLASQLAQAQLHLSENQQALAVQQLQQLQVQHVLDNVRIENSEQGQNNVGHLHDNLQIKDEKVLQNCTKLLSAQFGLHDVKANLMDVRTADGSIVKISAGLQDQDLAKSLGVEMVQNMYKVNVDDINQLLAYHEVFGKLQGEITGAAGNLVPSSNPNVNIQGSVVNNIVVPKGMENDPEASTSGMNSDCPPAVITGTHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNATELGRHGKCHLGGSMFTCTVCFHVFANAASLERHMKRHSTDKPYSCTICGKSFARKEHLENHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCTICSKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAFCSKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRSHTGERPFTCTECGKSFPLKGNLLFHQRSHNKGAGAERPFRCDLCDKDFMCKGHLVSHRRSHSGERPHACPDCGRTFVEKGNMLRHLRKHTTENLQGAASAQQEGNQPQPTSSATPQTSVANVQLPQVSQATSMSSPVTTGSIMQQALSMHPQPSHPVVVPTANGNVLATY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01096809;
- 90% Identity
- -
- 80% Identity
- -