Ofas014407.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold1114:138347-154133[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.8 5.4e+03 -2.3 0.0 35 51 76 92 67 93 0.75 2 12 0.0015 1.6 9.0 0.3 19 48 118 147 112 152 0.90 3 12 0.035 39 4.5 0.9 25 48 153 176 146 180 0.86 4 12 0.096 1.1e+02 3.1 0.1 23 48 180 205 177 208 0.88 5 12 0.0054 6 7.1 0.4 24 48 210 234 202 240 0.83 6 12 0.098 1.1e+02 3.1 0.7 22 48 266 292 261 296 0.85 7 12 0.004 4.5 7.6 0.2 20 48 293 321 289 324 0.83 8 12 0.00067 0.74 10.1 2.5 21 48 322 350 319 354 0.83 9 12 0.0019 2.1 8.6 0.5 26 51 357 382 348 384 0.87 10 12 0.0021 2.3 8.5 0.1 22 47 382 407 378 411 0.86 11 12 0.019 22 5.4 0.6 22 50 411 439 405 443 0.86 12 12 0.75 8.4e+02 0.3 0.2 22 48 440 466 435 468 0.83
Sequence Information
- Coding Sequence
- ATGGACTTCTCTTCTCTGGTAACTGTGAAAGTTGAGTCACCTGTCAACATCCCTAATGAGGGAGACCAGTGTTCTACAGTGATCGAGACAAAGTATATTAAGATGGAAGATGAATTCTCCCAAGTATTACAAGAAGATGAAGACGACATCAAAAGTGATGAGCAATCTCCAAACTCAGCACCATTTGACGAATTAAAATATTGTGAGCACTGCAATTATAAGTCAACTTCTTCTGGCGATTTGAAATTACACTTGAAATCCAAACATTCTAGTAAAACTTTTTATCACTGTCTCTACTGTGATTATAATTCTCCTTATTCTAGGTGCTTGAAGAGTCATATAATTGCTAAACATACTAGCGAAAGACCATATTCCTGCCCCCATTGCGAGTACAGTGCAAAACTGTCAAACACTTTAAAGAAACACATATTTACGAAACATACAGGACAAAGATCACAATCCTGTCCTCATTGTGAGTTCACTGCATTTCACCCTAGCAATTTAAAAAGGCACATATTGACCAGACATTCAGGACTAAGACCCTATTCCTGTCCCCATTGTGACTATAGTGCAACTCAGTCTTTCACTTTAAAGGATCACATATTGTCAAAACATACAAAACAAAAACAACATTCCTGTCCCCACTGTGAGTACAGTGCAGCACAGTCACAAAATTTACAGAGTCACATACTGGCCAAACATTCAGAACAAAAACCATATTCCAGCCCCCATTGTGAGTTTAGTGCTGTTGAGCCTTATCATTTAAAGACACATTTATTGGCCGAACATACAGAACAAAGACCGTATTCCTGTCCCCACTGCGAATACAGCACAACTCACTCTTCCAAATTAAAGGCACACATATCGTCAAAACATACGGAACAAAGACCATATTCCTGTCCCCATTGCGATTACAGTGCAACACAGTCAGGCGGTTTAATGAGACATATATTGACTAAACATTCAGAACAAAGACCATATTCCTGCCCCCATTGTGAGTACAGTGCAGTACAGTCACGCTGTTTAAAGAGACACGTATTAGCCACACATTCAGGCCAAATATCATATTCCTGCCCCCACTGCGAGTTCTGTACAGTTCAGGCAAGCAATTTAAAAAGGCACATAATGACTCAACACTCAGGAAAAAATCCATATGCCTGTCCCCATTGCGACTACAGTACAACTCAGTCTTCCAATTTAAAGAATCACATGTTGTCTAATCATACGGATCAAAGACCATATTCCTGCCCCCACTGTGAGTACAGTGCAGAACAGTTATTCAATTTAAAACATCACATATTAGCCAAACATTCAGAAAAAAGACCATACTCTTGCCACCATTGTGAGTTCAGTACAGTTCAGGTGGGCCATTTAAAAAGGCACATAATAAACAAACACTCAGGACAGTAA
- Protein Sequence
- MDFSSLVTVKVESPVNIPNEGDQCSTVIETKYIKMEDEFSQVLQEDEDDIKSDEQSPNSAPFDELKYCEHCNYKSTSSGDLKLHLKSKHSSKTFYHCLYCDYNSPYSRCLKSHIIAKHTSERPYSCPHCEYSAKLSNTLKKHIFTKHTGQRSQSCPHCEFTAFHPSNLKRHILTRHSGLRPYSCPHCDYSATQSFTLKDHILSKHTKQKQHSCPHCEYSAAQSQNLQSHILAKHSEQKPYSSPHCEFSAVEPYHLKTHLLAEHTEQRPYSCPHCEYSTTHSSKLKAHISSKHTEQRPYSCPHCDYSATQSGGLMRHILTKHSEQRPYSCPHCEYSAVQSRCLKRHVLATHSGQISYSCPHCEFCTVQASNLKRHIMTQHSGKNPYACPHCDYSTTQSSNLKNHMLSNHTDQRPYSCPHCEYSAEQLFNLKHHILAKHSEKRPYSCHHCEFSTVQVGHLKRHIINKHSGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01095997;
- 90% Identity
- iTF_01095997;
- 80% Identity
- iTF_01095997;