Ofas014405.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold1114:109511-117654[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.5 8.4e+03 -2.9 0.0 27 51 68 92 55 93 0.71 2 13 0.021 24 5.2 0.3 19 48 118 147 112 150 0.85 3 13 0.00086 0.96 9.7 0.8 22 48 150 176 145 178 0.91 4 13 0.00032 0.35 11.1 0.3 18 48 175 205 174 208 0.88 5 13 8.4e-05 0.094 12.9 1.4 21 48 207 234 202 240 0.84 6 13 3.8 4.3e+03 -2.0 0.1 23 49 238 264 234 269 0.68 7 13 0.14 1.6e+02 2.6 1.3 22 49 266 293 260 298 0.86 8 13 2.2 2.5e+03 -1.2 0.0 22 48 295 321 291 323 0.78 9 13 0.0008 0.89 9.8 3.1 22 48 324 350 316 353 0.87 10 13 0.00048 0.53 10.5 1.8 21 48 351 379 348 382 0.83 11 13 0.00095 1.1 9.6 0.7 22 48 382 408 377 412 0.88 12 13 0.0016 1.8 8.9 0.4 22 48 411 437 406 440 0.85 13 13 0.035 39 4.5 0.4 20 48 438 466 434 472 0.84
Sequence Information
- Coding Sequence
- ATGAACTTCTCCTCTCTAGTAACTGTGAAAGTTGAGTCACCTGTCAACATCCCTAATGAGGGAGACCTGTTTTCTACAGTCAGCGAGACAAAGGATATGAAGATGGAAGATGAATTCTCCCAAGTATTGCAAGAGGATGACAACACCAAAAGTGATGAGCAATCTCCAAACTCAGCTCCACCTGACGAATTAAAGTATTCGTGTCAACACTGCGAGTATAAATCGACTTCTTCTGGCGATTTAAAGTTACACATGAAATCGAAACATTCCAGCAAAACAATTTATCACTGTCTTTACTGTGATTATAATTCTCCTTATTCTAGGAGCTTAAATAATCATATAATTGCTAAACATACTAGCGAACGGCCATATTCCTGCCCCCATTGTGATTACAGTGCAAAACTACCAAATACTTTAAAGAAACACATATTTACCAAACATACAGGACAAAGACCACATTCCTGTCCTCACTGTGAGTTTAGTGCATTTCAGCCGAGCAATTTAAAAAGACACATATTGACACGCCATTCAGGAGAAAGACCATATTCCTGTCCCCAATGTGACTATAGTGCAACTCAGTCTTCCAATTTAAAGGATCATATATTGTCAAAACATACGGAACAAAGACCACATTCCTGTCCCCATTGTGAGTACAGTGCAGCACAGTCACGCAATTTAAAGAGCCACATTTTGGCCAAACATTCAGAACATAAACCATATTCTTGCCACCATTGTGAGTACAGTTCAGCTCGTTTTTGCAATTTAAAGTTCCATATATTGGCCAAACATCTGAAACAAAAACCATATTCTTGCCCCCATTGCGAGTACTGTGCAGTTCAGCCTTATCATTTAAAGACACATTTATTGGCCAAACATACAGAACAAAAACCGTTTTCCTGTGCCAACTGCGAATACAGCACAACTCACTCTTCAAAATTAAAGGCACACATAATGAACAAACATTCAAAACAAAGACCATATTCCTGCCCCCATTGCGAGTACAGCGCAGCACAGTCACGCTGTTTAAAGAGACATATTTTGACAAAACATTCAGAACAAAAACCACATTTCTGCCCCCATTGCGAGTACACTGCGGTTCAGTCACGGTGTTTAAAGAGGCACATATTGGCCACACATTCAGGACAAAGACCATATTCCTGCCCGCACTGCGAGTTTTGTACAGTTCAGGCTGGCAATTTAAAAAGGCACATATTCACCAAACATTCAGGTCAAAGACCATATTCCTGTCCCCACTGTGAGTACAATGCAACTCAGTCTTCCAATTTAAAGAATCACATATTGTCCAAACATGCGAAACAAAGACCACATTCCTGCCCCCACTGTGATTACAGCTCAGCACAGTTATTCAACTTAAAGAATCACATATTGGCTAAACATTCAGAACAAAAACCATATTCTTGCCACCATTGCGAGTTTAGTTCAGTCTATTCGTATAGTTTAAAGGAGCACATATTGAACAAGCATTCAGGAAAATGA
- Protein Sequence
- MNFSSLVTVKVESPVNIPNEGDLFSTVSETKDMKMEDEFSQVLQEDDNTKSDEQSPNSAPPDELKYSCQHCEYKSTSSGDLKLHMKSKHSSKTIYHCLYCDYNSPYSRSLNNHIIAKHTSERPYSCPHCDYSAKLPNTLKKHIFTKHTGQRPHSCPHCEFSAFQPSNLKRHILTRHSGERPYSCPQCDYSATQSSNLKDHILSKHTEQRPHSCPHCEYSAAQSRNLKSHILAKHSEHKPYSCHHCEYSSARFCNLKFHILAKHLKQKPYSCPHCEYCAVQPYHLKTHLLAKHTEQKPFSCANCEYSTTHSSKLKAHIMNKHSKQRPYSCPHCEYSAAQSRCLKRHILTKHSEQKPHFCPHCEYTAVQSRCLKRHILATHSGQRPYSCPHCEFCTVQAGNLKRHIFTKHSGQRPYSCPHCEYNATQSSNLKNHILSKHAKQRPHSCPHCDYSSAQLFNLKNHILAKHSEQKPYSCHHCEFSSVYSYSLKEHILNKHSGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01095998;
- 90% Identity
- iTF_01095998;
- 80% Identity
- iTF_01095998;