Basic Information

Insect: Oncopeltus fasciatus
Gene Symbol: -
Assembly: None
Location: Scaffold1114:91836-107727[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.2 1.4e+03 -0.4 0.0 25 51 57 83 44 84 0.83

2 18 0.0086 9.5 6.5 0.4 17 50 107 140 103 142 0.82

3 18 0.27 3e+02 1.7 0.5 20 38 168 187 163 197 0.77

4 18 0.053 60 4.0 0.4 23 48 199 225 194 227 0.86

5 18 6.3e-05 0.07 13.3 0.3 15 48 221 254 218 259 0.84

6 18 0.014 15 5.8 0.2 22 48 257 283 252 287 0.85

7 18 0.014 16 5.8 1.2 26 48 290 312 280 315 0.87

8 18 0.00038 0.43 10.8 0.8 23 48 316 341 313 344 0.88

9 18 0.092 1e+02 3.2 0.3 20 44 342 366 338 372 0.75

10 18 0.011 12 6.2 0.1 21 48 371 398 368 403 0.90

11 18 0.33 3.7e+02 1.4 0.2 17 48 396 427 394 431 0.81

12 18 1.6e-05 0.018 15.2 2.0 18 48 426 456 420 459 0.89

13 18 0.0028 3.2 8.0 1.0 23 48 460 485 457 487 0.92

14 18 0.029 33 4.8 0.3 16 44 482 510 480 523 0.81

15 18 0.017 19 5.6 0.9 19 44 542 567 537 577 0.82

16 18 0.071 79 3.6 0.1 24 48 575 599 569 604 0.88

17 18 0.2 2.3e+02 2.1 0.2 17 44 597 624 593 631 0.75

18 18 0.00077 0.86 9.9 0.3 23 48 631 656 618 660 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.2	1.4e+03	-0.4	0.0	25	51	57	83	44	84	0.83
2	18	0.0086	9.5	6.5	0.4	17	50	107	140	103	142	0.82
3	18	0.27	3e+02	1.7	0.5	20	38	168	187	163	197	0.77
4	18	0.053	60	4.0	0.4	23	48	199	225	194	227	0.86
5	18	6.3e-05	0.07	13.3	0.3	15	48	221	254	218	259	0.84
6	18	0.014	15	5.8	0.2	22	48	257	283	252	287	0.85
7	18	0.014	16	5.8	1.2	26	48	290	312	280	315	0.87
8	18	0.00038	0.43	10.8	0.8	23	48	316	341	313	344	0.88
9	18	0.092	1e+02	3.2	0.3	20	44	342	366	338	372	0.75
10	18	0.011	12	6.2	0.1	21	48	371	398	368	403	0.90
11	18	0.33	3.7e+02	1.4	0.2	17	48	396	427	394	431	0.81
12	18	1.6e-05	0.018	15.2	2.0	18	48	426	456	420	459	0.89
13	18	0.0028	3.2	8.0	1.0	23	48	460	485	457	487	0.92
14	18	0.029	33	4.8	0.3	16	44	482	510	480	523	0.81
15	18	0.017	19	5.6	0.9	19	44	542	567	537	577	0.82
16	18	0.071	79	3.6	0.1	24	48	575	599	569	604	0.88
17	18	0.2	2.3e+02	2.1	0.2	17	44	597	624	593	631	0.75
18	18	0.00077	0.86	9.9	0.3	23	48	631	656	618	660	0.86

Sequence Information

Coding Sequence: ATGGACTTCTCCTCTCTAGAGCCCTTGAGTGGAGCTCCGATTACAGTAACTGTGAAAGAAGAGCCTGCTATCAATATCCCCTACGAGGAAGACCTGCAATTTCAAGAAGAGGATGAGAGAACTGAAGGTAACCAGGAATCTCTAAACTCTTCTCCTGAAGAATTTAAGTATTCGTGTCAGCACTGCGACTATATGTCGAATTCTTCTGGCGATTTGAAACTACACTTGAACTCCAAACATTCTAGTAAAACGATTCATCAGTGTCTCTTCTGTGATTACAGTGCTCCTTATGCAAGTAACTTGATGAGTCATATCAGTTCTAAACATACTAACGAACGACCATATTCCTGTCCCCATTGTGATTACAGTGCAATTTGTTCTGGCGATTTAAAACTACACTTGAAATCCAAACATTCTCGTAAAACGATTCATCACTGTCTCTACTGTGATTACAATTCCCCTTATACTACCAGCTTGAAGAGTCACATCCTTGCTAAACATACTAACGAACGACCTTATTCCTGTCCCCATTGTGAGTATAGAGCAATAAAGGCTTCCCAGGTAAAAGCACATATAATGGGGAAGCATACTGAACAAATACCATATAATTGTTCTCACTGCGAGTACAGTACAAATCAGTCTTGCAATTTAAAGGATCACATAAGAAGCAAACATACTAACGAACGACCTTATTCTTGCCCCAACTGCGAATACGCCGCAGTTCGTTCTGGTGATTTAAAGAGACATATATTGGACAAACATAATGGACAAAAACCTTTTCTTTGCCCCCACTGTGAGTACACTGCAACTCGATCTTACAATTTAAAGAAGCACATATTATCCCAACATACGGTACAAAGACTATATTCCTGCCCACATTGCGAATACAGTACAGTTGAGTCTTGCAATTTAAAAAGGCACATATTGATTAAACATTCAGGACAAAGACCCTTTTCCTGCCCAAACTGCGAATACACTACAACTCAGTCTTGTAATTTAAGGAATCACTTATTGTCTCAACATAAGGAACAAAGACCACATTCCTGTCCCCACTGTGAGTACAGTACAGTTCTGTTGGGAAATTTAAAAAGGCACATATTGACCATACATTCAGGACAAACATATTCATGCCCTCACTGCGAGTACAGTACAACTCAGGCTATCAATTTAAAGGATCACATAAAGAGCAAACATACTAACGAACGACCATATTCCTGTACTTACTGTGAATACACTGCAACTCGATCTAACATTTTAAAGACGCACATATTATCCCAACATACTAATGAAAGACCATATTCCTGCCCTCACTGCGAATACAGTACAGTTCAATCTTGCAATTTAAAAAGACACATATCGATTAAACATTCCGGGCTAAGACCTTGTTCTTGTCCCCACTGCGAGTACAGTACAAATCAGTCTTGCAATCTAAAGGATCACATAAGGAGCAAACATACTAACGAACGACCATATTCCTGCACTTACTGCGAATACAGTGCAGTTCGTTCTGGAGATTTAAAGAAACATATGATAAAACATTCCGGGCTAAGACCACATATCCGCCCCCAATGTGAGTACAGTACAACTCAGGCTTCCTATTTAAAGGTTCACATAAATAGCGAACATGCTAACGAACGACCATATTCCTGCCCCCATTGCGAATACAGTGCAGTTTGTTCTGAAGATTTAAAGAGACATATGATGAAACATTCCGGACTAAGACCACATATCAGCCCTCAATGCGAGTTCAGTACAAATCAGTCTTGCAATTTAAAGGATCACATAAATAGCAAACATACTAAAGAACGACCATATTCCTGCTCCCATTGCGAATACAGTGCAGTTCGTTCTGGAGATTTAAAGAAACATATGATAAAACATTCCGAGCTGAGACCTCATTCCTGTCCCCACTGTTGGTTCAGAACAAAACGGTCTAAAAGTTTAAAACGTCACATATTGTCCCAACATACGAAACATGTTCCTGCCATCACTACGAATACTGAACCGCTAACTATAGTTCTTTAA
Protein Sequence: MDFSSLEPLSGAPITVTVKEEPAINIPYEEDLQFQEEDERTEGNQESLNSSPEEFKYSCQHCDYMSNSSGDLKLHLNSKHSSKTIHQCLFCDYSAPYASNLMSHISSKHTNERPYSCPHCDYSAICSGDLKLHLKSKHSRKTIHHCLYCDYNSPYTTSLKSHILAKHTNERPYSCPHCEYRAIKASQVKAHIMGKHTEQIPYNCSHCEYSTNQSCNLKDHIRSKHTNERPYSCPNCEYAAVRSGDLKRHILDKHNGQKPFLCPHCEYTATRSYNLKKHILSQHTVQRLYSCPHCEYSTVESCNLKRHILIKHSGQRPFSCPNCEYTTTQSCNLRNHLLSQHKEQRPHSCPHCEYSTVLLGNLKRHILTIHSGQTYSCPHCEYSTTQAINLKDHIKSKHTNERPYSCTYCEYTATRSNILKTHILSQHTNERPYSCPHCEYSTVQSCNLKRHISIKHSGLRPCSCPHCEYSTNQSCNLKDHIRSKHTNERPYSCTYCEYSAVRSGDLKKHMIKHSGLRPHIRPQCEYSTTQASYLKVHINSEHANERPYSCPHCEYSAVCSEDLKRHMMKHSGLRPHISPQCEFSTNQSCNLKDHINSKHTKERPYSCSHCEYSAVRSGDLKKHMIKHSELRPHSCPHCWFRTKRSKSLKRHILSQHTKHVPAITTNTEPLTIVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01095969;
90% Identity: iTF_01095969;
80% Identity: iTF_01095969;