Ofas014410.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold1114:91836-107727[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00052 0.032 14.8 2.0 1 23 57 80 57 80 0.97 2 21 0.0034 0.21 12.2 0.8 1 23 86 109 86 109 0.96 3 21 0.047 2.9 8.6 2.4 1 23 115 138 115 138 0.97 4 21 0.46 28 5.5 3.2 1 23 144 167 144 167 0.93 5 21 0.0053 0.33 11.6 0.3 1 23 173 196 173 196 0.95 6 21 0.0011 0.068 13.7 5.9 1 23 202 225 202 225 0.97 7 21 0.00057 0.035 14.6 0.1 1 23 231 254 231 254 0.94 8 21 5e-05 0.0031 17.9 1.9 1 23 260 283 260 283 0.94 9 21 0.00035 0.022 15.3 3.0 1 23 289 312 289 312 0.97 10 21 0.00029 0.018 15.6 2.9 1 23 318 341 318 341 0.96 11 21 0.00022 0.013 16.0 1.4 1 23 347 370 347 370 0.97 12 21 2.5e-05 0.0016 18.9 1.4 1 23 375 398 375 398 0.97 13 21 0.02 1.2 9.8 0.9 1 23 404 427 404 427 0.97 14 21 0.00012 0.0071 16.8 3.9 1 23 433 456 433 456 0.96 15 21 0.0028 0.18 12.4 7.2 2 23 463 485 462 485 0.96 16 21 2.5e-05 0.0015 18.9 0.6 1 23 491 513 491 513 0.98 17 21 0.0067 0.41 11.3 0.0 4 23 522 542 522 542 0.94 18 21 0.0044 0.27 11.9 2.9 1 23 548 570 548 570 0.98 19 21 0.097 6 7.6 0.7 4 23 579 599 579 599 0.94 20 21 4.7e-05 0.0029 18.1 1.4 1 23 605 627 605 627 0.98 21 21 0.00097 0.06 13.9 5.4 1 23 633 656 633 656 0.96
Sequence Information
- Coding Sequence
- ATGGACTTCTCCTCTCTAGAGCCCTTGAGTGGAGCTCCGATTACAGTAACTGTGAAAGAAGAGCCTGCTATCAATATCCCCTACGAGGAAGACCTGCAATTTCAAGAAGAGGATGAGAGAACTGAAGGTAACCAGGAATCTCTAAACTCTTCTCCTGAAGAATTTAAGTATTCGTGTCAGCACTGCGACTATATGTCGAATTCTTCTGGCGATTTGAAACTACACTTGAACTCCAAACATTCTAGTAAAACGATTCATCAGTGTCTCTTCTGTGATTACAGTGCTCCTTATGCAAGTAACTTGATGAGTCATATCAGTTCTAAACATACTAACGAACGACCATATTCCTGTCCCCATTGTGATTACAGTGCAATTTGTTCTGGCGATTTAAAACTACACTTGAAATCCAAACATTCTCGTAAAACGATTCATCACTGTCTCTACTGTGATTACAATTCCCCTTATACTACCAGCTTGAAGAGTCACATCCTTGCTAAACATACTAACGAACGACCTTATTCCTGTCCCCATTGTGAGTATAGAGCAATAAAGGCTTCCCAGGTAAAAGCACATATAATGGGGAAGCATACTGAACAAATACCATATAATTGTTCTCACTGCGAGTACAGTACAAATCAGTCTTGCAATTTAAAGGATCACATAAGAAGCAAACATACTAACGAACGACCTTATTCTTGCCCCAACTGCGAATACGCCGCAGTTCGTTCTGGTGATTTAAAGAGACATATATTGGACAAACATAATGGACAAAAACCTTTTCTTTGCCCCCACTGTGAGTACACTGCAACTCGATCTTACAATTTAAAGAAGCACATATTATCCCAACATACGGTACAAAGACTATATTCCTGCCCACATTGCGAATACAGTACAGTTGAGTCTTGCAATTTAAAAAGGCACATATTGATTAAACATTCAGGACAAAGACCCTTTTCCTGCCCAAACTGCGAATACACTACAACTCAGTCTTGTAATTTAAGGAATCACTTATTGTCTCAACATAAGGAACAAAGACCACATTCCTGTCCCCACTGTGAGTACAGTACAGTTCTGTTGGGAAATTTAAAAAGGCACATATTGACCATACATTCAGGACAAACATATTCATGCCCTCACTGCGAGTACAGTACAACTCAGGCTATCAATTTAAAGGATCACATAAAGAGCAAACATACTAACGAACGACCATATTCCTGTACTTACTGTGAATACACTGCAACTCGATCTAACATTTTAAAGACGCACATATTATCCCAACATACTAATGAAAGACCATATTCCTGCCCTCACTGCGAATACAGTACAGTTCAATCTTGCAATTTAAAAAGACACATATCGATTAAACATTCCGGGCTAAGACCTTGTTCTTGTCCCCACTGCGAGTACAGTACAAATCAGTCTTGCAATCTAAAGGATCACATAAGGAGCAAACATACTAACGAACGACCATATTCCTGCACTTACTGCGAATACAGTGCAGTTCGTTCTGGAGATTTAAAGAAACATATGATAAAACATTCCGGGCTAAGACCACATATCCGCCCCCAATGTGAGTACAGTACAACTCAGGCTTCCTATTTAAAGGTTCACATAAATAGCGAACATGCTAACGAACGACCATATTCCTGCCCCCATTGCGAATACAGTGCAGTTTGTTCTGAAGATTTAAAGAGACATATGATGAAACATTCCGGACTAAGACCACATATCAGCCCTCAATGCGAGTTCAGTACAAATCAGTCTTGCAATTTAAAGGATCACATAAATAGCAAACATACTAAAGAACGACCATATTCCTGCTCCCATTGCGAATACAGTGCAGTTCGTTCTGGAGATTTAAAGAAACATATGATAAAACATTCCGAGCTGAGACCTCATTCCTGTCCCCACTGTTGGTTCAGAACAAAACGGTCTAAAAGTTTAAAACGTCACATATTGTCCCAACATACGAAACATGTTCCTGCCATCACTACGAATACTGAACCGCTAACTATAGTTCTTTAA
- Protein Sequence
- MDFSSLEPLSGAPITVTVKEEPAINIPYEEDLQFQEEDERTEGNQESLNSSPEEFKYSCQHCDYMSNSSGDLKLHLNSKHSSKTIHQCLFCDYSAPYASNLMSHISSKHTNERPYSCPHCDYSAICSGDLKLHLKSKHSRKTIHHCLYCDYNSPYTTSLKSHILAKHTNERPYSCPHCEYRAIKASQVKAHIMGKHTEQIPYNCSHCEYSTNQSCNLKDHIRSKHTNERPYSCPNCEYAAVRSGDLKRHILDKHNGQKPFLCPHCEYTATRSYNLKKHILSQHTVQRLYSCPHCEYSTVESCNLKRHILIKHSGQRPFSCPNCEYTTTQSCNLRNHLLSQHKEQRPHSCPHCEYSTVLLGNLKRHILTIHSGQTYSCPHCEYSTTQAINLKDHIKSKHTNERPYSCTYCEYTATRSNILKTHILSQHTNERPYSCPHCEYSTVQSCNLKRHISIKHSGLRPCSCPHCEYSTNQSCNLKDHIRSKHTNERPYSCTYCEYSAVRSGDLKKHMIKHSGLRPHIRPQCEYSTTQASYLKVHINSEHANERPYSCPHCEYSAVCSEDLKRHMMKHSGLRPHISPQCEFSTNQSCNLKDHINSKHTKERPYSCSHCEYSAVRSGDLKKHMIKHSELRPHSCPHCWFRTKRSKSLKRHILSQHTKHVPAITTNTEPLTIVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01096271;
- 90% Identity
- iTF_01096271;
- 80% Identity
- iTF_01096271;