Basic Information

Insect: Oligia latruncula
Gene Symbol: -
Assembly: GCA_948474745.1
Location: OX419713.1:3679039-3685632[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.6e-05 0.0025 18.5 4.7 1 23 36 58 36 58 0.99

2 15 0.042 2.9 8.9 0.9 2 23 84 106 83 106 0.93

3 15 6.1e-05 0.0043 17.8 0.6 1 23 158 181 158 181 0.97

4 15 0.00029 0.02 15.7 1.8 2 23 187 209 186 209 0.96

5 15 0.37 26 5.9 0.1 1 12 214 225 214 228 0.88

6 15 0.24 17 6.5 2.6 1 23 262 285 262 285 0.95

7 15 2.9 2e+02 3.1 0.2 3 23 312 333 310 333 0.80

8 15 0.61 42 5.2 2.2 3 23 357 378 355 378 0.93

9 15 0.0027 0.19 12.6 0.1 1 23 384 407 384 407 0.94

10 15 0.00025 0.018 15.8 1.4 2 23 414 436 413 436 0.93

11 15 0.089 6.2 7.8 0.2 2 23 442 464 441 464 0.92

12 15 0.013 0.88 10.5 2.4 1 23 471 494 471 494 0.97

13 15 0.0033 0.23 12.3 0.1 3 23 502 522 500 522 0.93

14 15 3.5e-05 0.0024 18.6 0.7 1 23 528 550 528 550 0.98

15 15 3.3e-05 0.0023 18.6 1.3 1 23 556 578 556 579 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.6e-05	0.0025	18.5	4.7	1	23	36	58	36	58	0.99
2	15	0.042	2.9	8.9	0.9	2	23	84	106	83	106	0.93
3	15	6.1e-05	0.0043	17.8	0.6	1	23	158	181	158	181	0.97
4	15	0.00029	0.02	15.7	1.8	2	23	187	209	186	209	0.96
5	15	0.37	26	5.9	0.1	1	12	214	225	214	228	0.88
6	15	0.24	17	6.5	2.6	1	23	262	285	262	285	0.95
7	15	2.9	2e+02	3.1	0.2	3	23	312	333	310	333	0.80
8	15	0.61	42	5.2	2.2	3	23	357	378	355	378	0.93
9	15	0.0027	0.19	12.6	0.1	1	23	384	407	384	407	0.94
10	15	0.00025	0.018	15.8	1.4	2	23	414	436	413	436	0.93
11	15	0.089	6.2	7.8	0.2	2	23	442	464	441	464	0.92
12	15	0.013	0.88	10.5	2.4	1	23	471	494	471	494	0.97
13	15	0.0033	0.23	12.3	0.1	3	23	502	522	500	522	0.93
14	15	3.5e-05	0.0024	18.6	0.7	1	23	528	550	528	550	0.98
15	15	3.3e-05	0.0023	18.6	1.3	1	23	556	578	556	579	0.96

Sequence Information

Coding Sequence: ATGACGTGTTACAAAATTCTCGCTACGCGGAAGGAACTGCGAAGAATATTCACGATATTACTAGGACATTCCACTATCATGCCGTTCAAATGGTATCTTAACCGATACCGGTGTTTTTACTGCGATGAGACATTTATCGACTGCTCAAAATTAAAAGAACACACCAAAACACATGACGAAGTAAAACTTAACAAGATTTTGAAAAGGATTGGGTGCCATAGCCGGATTAAATGGGATATTTCTGAGATATCTTGCAAATTATGCCCTAAATCGATACAAAATTTCGATCATTATACTAATCATTTATCTGAAGCTCACGATTTAGATATTGATAGAGATGTATTCGACAAGTATTGCTACATATTCAATCTATCTGACGATGGCATGGTTTGCATCGAGTGCTGCGAGAGCTTCAAATTCTTCGGCCCATTACTGAGGCATGTCAACAAATTCCATAATAATGCTCAAAAATATGTTTGTGATTACTGTGGCCTAGCTTTTACGTTAAAAGGGACTATCAAGCACCATATAAGAAATGTTCACTCCGGTTTGAAAACGACTTGCAAATTTTGCGGTAAAAACTTCAATAATAAAGTTCGTTTGGCCAATCATAGCAGAAAAGCCCACAAAACTGGTAAATTCGTTTGTGACATGTGTCCTGAAACTTTTGAAAATGAAGAGGCGAGACTCGCTGAAAAGCAAAGAAAAGACGAGCTCACGAAGTTCATCACTATCATTTTAGAAAACTCCTCGATTGTCCCGTTCAGATGGGCCGCTAACAAGTACATGTGCTTCTACTGCTGTTACTCCTTCGTAGAGAGCGGAAAACTCAAGGAACACACCAATGAAGAACATAAAGGAGCTAATCTAAAGAATGTACTCAGGACCTTGGTTGGAAGCAGTCGCATTAAACTTGACACTTCAGAAATCTTTTGCACAATATGCGGACTGCAATTCCTTGTTTTCAACGATTTCGTGAACCATCTAGACTCACTCCACGACTTCAAATTCAACAAGGAAATAGCCAATTCTATCTTCACTTTCCATCTTTCAGACGATATATTGTTCTGTCAGGAATGCGCTCAGGAGTTCCGATTCTTCGGGACGCTATTGAAGCATGCTCACAAATTCCACAACAAGTTTAGAACGTTTCTGTGTGAGATGTGTGGACAAGGTTTCGTTGCTTACGCGAATATGGTCAGCCATATGAGGAACGTTCACACCTTCACTCAAGGCTTGAAATGTCGAAAATGTGACAAGGAATTCCGAAACACTTATTCCCTACAAATTCACAGTGAAAAAGTACACAGGACCGACATGCTGAAATGCCCGAAGTGTCCAGAGATTCTCCCATCACAATACTTTAAGAAACGGCATTTAGCGCTTGTGCATGACGTCAAAAAACTGCAGTTCAGATGCGACCAATGCAATATGCTATTTACAATGAAGAGTAGACTCGTTCAGCATAAGCAGAGGACTCATCTAAAACAGAAAACTATCGCCTGTGAGGTATGCGGCTTCAAAGTCTTTAACAACGAACTTTTGAAAAGCCACATGGTTCGCCACGATGACACGAGGCCTTTCGAGTGCGAAATTTGCGAAAAGGCGTTCCAGAGGAAGAAGACGTTAGATATACATAAGAGGATACACACGAATGATAAAAGGTATGTGTGTAAGGAGTGTGATAGGGCTTTCGTTCAGATGACGAGTTTGAAGTTGCATGTGAAGTTGCATCACGGAGGGGCCGGGGGTGCCGAAGAGGCCGGAGGGTCTGAAGAGGCCTCTTGGCATTAA
Protein Sequence: MTCYKILATRKELRRIFTILLGHSTIMPFKWYLNRYRCFYCDETFIDCSKLKEHTKTHDEVKLNKILKRIGCHSRIKWDISEISCKLCPKSIQNFDHYTNHLSEAHDLDIDRDVFDKYCYIFNLSDDGMVCIECCESFKFFGPLLRHVNKFHNNAQKYVCDYCGLAFTLKGTIKHHIRNVHSGLKTTCKFCGKNFNNKVRLANHSRKAHKTGKFVCDMCPETFENEEARLAEKQRKDELTKFITIILENSSIVPFRWAANKYMCFYCCYSFVESGKLKEHTNEEHKGANLKNVLRTLVGSSRIKLDTSEIFCTICGLQFLVFNDFVNHLDSLHDFKFNKEIANSIFTFHLSDDILFCQECAQEFRFFGTLLKHAHKFHNKFRTFLCEMCGQGFVAYANMVSHMRNVHTFTQGLKCRKCDKEFRNTYSLQIHSEKVHRTDMLKCPKCPEILPSQYFKKRHLALVHDVKKLQFRCDQCNMLFTMKSRLVQHKQRTHLKQKTIACEVCGFKVFNNELLKSHMVRHDDTRPFECEICEKAFQRKKTLDIHKRIHTNDKRYVCKECDRAFVQMTSLKLHVKLHHGGAGGAEEAGGSEEASWH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00173483;
90% Identity: iTF_00071763;
80% Identity: -