Basic Information

Insect: Atethmia centrago
Gene Symbol: -
Assembly: GCA_905333075.2
Location: HG995396.1:7631998-7635018[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00022 0.034 16.4 4.2 1 23 10 32 10 32 0.99

2 14 0.098 15 8.0 1.1 2 23 58 80 57 80 0.91

3 14 7.2e-05 0.011 17.9 0.6 1 23 132 155 132 155 0.97

4 14 0.00055 0.086 15.1 2.6 2 23 161 183 160 183 0.96

5 14 1.3 2e+02 4.5 5.0 1 23 226 249 226 249 0.93

6 14 0.061 9.4 8.7 0.5 3 23 276 297 274 297 0.94

7 14 0.0056 0.86 12.0 1.9 2 23 320 342 319 342 0.94

8 14 0.01 1.6 11.1 0.0 1 23 348 371 348 371 0.94

9 14 0.0035 0.55 12.6 3.0 2 19 378 395 377 400 0.89

10 14 0.09 14 8.2 0.2 2 23 406 428 405 428 0.92

11 14 0.031 4.8 9.6 1.6 1 23 435 458 435 458 0.96

12 14 0.0013 0.21 13.9 0.3 3 23 466 486 465 486 0.94

13 14 2.8e-06 0.00044 22.3 0.8 1 23 492 514 492 514 0.98

14 14 1.1e-06 0.00018 23.6 1.0 1 23 520 542 520 543 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00022	0.034	16.4	4.2	1	23	10	32	10	32	0.99
2	14	0.098	15	8.0	1.1	2	23	58	80	57	80	0.91
3	14	7.2e-05	0.011	17.9	0.6	1	23	132	155	132	155	0.97
4	14	0.00055	0.086	15.1	2.6	2	23	161	183	160	183	0.96
5	14	1.3	2e+02	4.5	5.0	1	23	226	249	226	249	0.93
6	14	0.061	9.4	8.7	0.5	3	23	276	297	274	297	0.94
7	14	0.0056	0.86	12.0	1.9	2	23	320	342	319	342	0.94
8	14	0.01	1.6	11.1	0.0	1	23	348	371	348	371	0.94
9	14	0.0035	0.55	12.6	3.0	2	19	378	395	377	400	0.89
10	14	0.09	14	8.2	0.2	2	23	406	428	405	428	0.92
11	14	0.031	4.8	9.6	1.6	1	23	435	458	435	458	0.96
12	14	0.0013	0.21	13.9	0.3	3	23	466	486	465	486	0.94
13	14	2.8e-06	0.00044	22.3	0.8	1	23	492	514	492	514	0.98
14	14	1.1e-06	0.00018	23.6	1.0	1	23	520	542	520	543	0.96

Sequence Information

Coding Sequence: ATGCCGTTCAAATGGTATCTTAACCGTTACCGGTGTTTTTACTGCGATGAAATTTTTATCGACTGCTCAAAATTGAAAGAACACACCAAAAAACATGacgaaataaaactaaatagcaTTCTGAAAAGAATTGGGTGCCATAGTCGGATTAAATGGGATATCTCAGAGTTATCCTGCAAATTATGTCCTAAATCGATACAAAATTTCGATCATTATTTAAAGCATTTATCTGACGCTCACGATTTAGAAATGGATAGAGATGTATTTGATAAGTATTGCTACGTATTCAATCTGTCTGACGATGGCATGGTTTGCATCGAATGCTGTGAGAGCTTCAAATTTTTTGGGCCGTTACTCAGGCACGTCAACAAATTCCATAATAATGCCCAAAAATATGTTTGTGATTACTGTGGCCTCGCTTTTACGTTAAAAGGCACAATCAAGCACCATATAAGAAACGTTCACACAGATTTAAAAACGACTTGCACATTTTGTGGTAAAAACTTCAAAAGTAAAGTTCGTTTAGCGAATCATAGCAGAAAAACTCATAAAACTGATTACGAGGATGAAGAGGCGAGACTCGCTGAAAAGCAAAGAAAAGACGACCTCACGAGGTTCATCACCATCATCTTAGAAAACTCTTCGATCCTGCCGTTCAGATGGGCAGCTAACAAATACATGTGTTTCTACTGCTGTTGTTCCTTCGTAGACAGCACAAAGCTCAAAGAACATACCATTGAAGAACATAAAGGAGCAAATCTTAAAAACGTACTCAGAACCTTGGTAGGAAGCAGTCGCGTAAAACTCGACACTTCAGAAATCATCTGCAAAAAGTGCGACGAACAATTCCATGTTTTCGACGATTTCGTGAACCATTTAGCATCAATCCACGAGTTCAAATTCAACAAAGAAATAGCCAATTCTATATTTACATTCCATCTGTCTGACGATGTAATATCCTGTCAAGAATGTGGTCAGGAGTTCAGATTCTTCGGGACGCTATTAAAGCATGTCCACAAATTCCATAATAAGTATAAAACATTCCTGTGTGAGATATGTGGACAAGGATTCGTTGCTTATGCGAACGTGATTAGCCATATAAAAAACGTACACACATTCTCTCAAGGGCTTAAATGTCGAAGATGCGACAAAGTTTTCCGAAACACTTATTCCCTACAAGTACACTGTGAAAAAGTCCACAGGACCGAAATGCTGAAATGCCCGAAGTGTCCAGAGATTCTCGCATCCCAATACTTTAAGAAACGGCATTTAGCTCTCGTGCATGACGTCAAAAAACTGCAATTCAAATGCGACCAATGCGAGTTGCTATTTACAATGAAAAGTAGACTTGTTCAGCATAAGTTACGAACTCATTTGAAGCAGAAAACCGTCGCCTGTGACGTATGTGGCTTCAAAGTGTTTAACAACGAACTTTTGAAACGCCACATGGTTCGCCACGATGACTCGAGACCTTTCGAATGCAAAATTTGCGAAAAGGCGTTCCAGAGGAAGAAGACTTTGGATATTCATATGAGGATACACACGAACGATAAGAGGTATGTATGTAAGGAGTGTGGGAGGGCCTTCGTGCAGGTGACAAGTTTGAAGTTACATATGAGATTGCATCACGGAGGGGCCGAAGGGGCCTCTTGGCATTAA
Protein Sequence: MPFKWYLNRYRCFYCDEIFIDCSKLKEHTKKHDEIKLNSILKRIGCHSRIKWDISELSCKLCPKSIQNFDHYLKHLSDAHDLEMDRDVFDKYCYVFNLSDDGMVCIECCESFKFFGPLLRHVNKFHNNAQKYVCDYCGLAFTLKGTIKHHIRNVHTDLKTTCTFCGKNFKSKVRLANHSRKTHKTDYEDEEARLAEKQRKDDLTRFITIILENSSILPFRWAANKYMCFYCCCSFVDSTKLKEHTIEEHKGANLKNVLRTLVGSSRVKLDTSEIICKKCDEQFHVFDDFVNHLASIHEFKFNKEIANSIFTFHLSDDVISCQECGQEFRFFGTLLKHVHKFHNKYKTFLCEICGQGFVAYANVISHIKNVHTFSQGLKCRRCDKVFRNTYSLQVHCEKVHRTEMLKCPKCPEILASQYFKKRHLALVHDVKKLQFKCDQCELLFTMKSRLVQHKLRTHLKQKTVACDVCGFKVFNNELLKRHMVRHDDSRPFECKICEKAFQRKKTLDIHMRIHTNDKRYVCKECGRAFVQVTSLKLHMRLHHGGAEGASWH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01094311; iTF_00071763;
90% Identity: -
80% Identity: -