Basic Information

Insect: Amphipoea oculea
Gene Symbol: -
Assembly: GCA_945859585.1
Location: CAMAOF010000123.1:1295993-1302262[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.9e-05 0.0023 18.6 4.7 1 23 10 32 10 32 0.99

2 14 0.034 2.7 9.0 0.9 2 23 58 80 57 80 0.93

3 14 4.9e-05 0.0039 17.9 0.6 1 23 132 155 132 155 0.97

4 14 0.00093 0.074 13.9 3.7 2 23 161 183 160 183 0.95

5 14 0.67 54 4.9 2.5 1 23 223 246 223 246 0.95

6 14 2.6 2.1e+02 3.0 0.6 3 23 273 294 271 294 0.82

7 14 0.49 39 5.3 2.2 3 23 318 339 316 339 0.93

8 14 0.0012 0.099 13.5 0.1 1 23 345 368 345 368 0.94

9 14 0.012 0.96 10.4 4.1 2 19 375 392 374 397 0.89

10 14 0.071 5.7 7.9 0.2 2 23 403 425 402 425 0.92

11 14 0.0034 0.27 12.1 1.4 1 23 432 455 432 455 0.97

12 14 0.00058 0.046 14.5 0.3 3 23 463 483 462 483 0.94

13 14 2.3e-06 0.00019 22.1 0.4 1 23 489 511 489 511 0.98

14 14 1.2e-05 0.00099 19.8 0.9 1 23 517 539 517 540 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.9e-05	0.0023	18.6	4.7	1	23	10	32	10	32	0.99
2	14	0.034	2.7	9.0	0.9	2	23	58	80	57	80	0.93
3	14	4.9e-05	0.0039	17.9	0.6	1	23	132	155	132	155	0.97
4	14	0.00093	0.074	13.9	3.7	2	23	161	183	160	183	0.95
5	14	0.67	54	4.9	2.5	1	23	223	246	223	246	0.95
6	14	2.6	2.1e+02	3.0	0.6	3	23	273	294	271	294	0.82
7	14	0.49	39	5.3	2.2	3	23	318	339	316	339	0.93
8	14	0.0012	0.099	13.5	0.1	1	23	345	368	345	368	0.94
9	14	0.012	0.96	10.4	4.1	2	19	375	392	374	397	0.89
10	14	0.071	5.7	7.9	0.2	2	23	403	425	402	425	0.92
11	14	0.0034	0.27	12.1	1.4	1	23	432	455	432	455	0.97
12	14	0.00058	0.046	14.5	0.3	3	23	463	483	462	483	0.94
13	14	2.3e-06	0.00019	22.1	0.4	1	23	489	511	489	511	0.98
14	14	1.2e-05	0.00099	19.8	0.9	1	23	517	539	517	540	0.96

Sequence Information

Coding Sequence: ATGCCGTTCAAATGGTATCTTAACCGATACCGGTGTTTTTACTGCGATGAGACATTTATCGACTGCTCAAAATTAAAAGAACACACGAAAACACATGACGAAGTAAAACTTAACAAGATCTTGAAAAGGATTGGGTGCCATAGCCGGATTAAATGGGACATCTCTGAGATATCCTGCAAATTATGCCCTAAATCGATACAAAATTTCGATCATTATACTAATCATTTATCTGAAGCTCACGATCTAGAAATTGATAGAGATGTGTTCGACAAGTGTTGCTACATATTCAATCTATCTGACGATGGAATGGTTTGCATCGAGTGCTGCGAGAGCTTCAATTTTTTTGGCCCATTACTGAGGCATGTCAACAAATTCCATAATAATGCTCAAAAATATGTTTGTGATTACTGTGGCCTAGCTTTTACGTTAAAAGGGACTATCAAACACCATATAAGAAATGTTCACACCGATTTGAAAACGACTTGCAAATTTTGTGGAAAATACTTTAAAAATAAAGTTTGTTTGGCCAATCATAACAGAAACGCTCATAAAACTGATGAAGAGGCGAGGCTCGCTGAAAAGCACCGAAAAGACGAGCTCACGAAGTTCATCACTATTATTTTAGAAAACTCTTCGATTGTCCCGTTCAGATGGGCAGCTAACAAGTACATGTGCTTCTACTGCTGTTACTCCTTTGTAGAGAGCGGCAGACTCAAGGAACATACCAATGAAGAACATAAAGGAGCTAATCTAAAGAATGTACTCAGAACCTTGGTTGGAAGCAGTCGCATTAAACTCGACACTTCAGAAATCTTTTGCACAATATGCGGACTGCAATTCCTTGTTTTCAACGACTTCGTGCACCATCTAGACTCACTCCACGACTTCAAATTCAACAAGGAAATAGTCAATTCTATCTTCACTTTCCATCTGTCTGACGATATATTGTTCTGTCAGGAATGCGCTCAGGAGTTCCGATTCTTCGGGACGCTATTGAAGCATGCTCACAAATTTCACAACAAGTTTAGAACGTTTCTTTGTGAGATGTGTGGACAAGGGTTCGTTGCTTACGCGAATATGATCAGCCATATGAGGAACGTTCACACCTTCACTCAAGGCTTGAAATGTCGAAAATGTGACAAGGAATTCCGAAACACTTATTCCCTGTCAACTCACTGTGAAAAAGTACACAGAACCGACATGCTGAAATGCCCGAAGTGTCCAGAGATTCTCCCATCACAATACTTTAAGAAACGGCACTTAGCGCTTGTGCATGACGTCAAAAAACTACAGTTCAGATGCGACCAATGCGATATGCTATTTACAATGAAGAGTAGACTCGTCCAGCATAAACAGAGGATTCATCTAAAACAGAAAACTGTCGCCTGTGAGGTATGCGGCTTCAAAGTCTTCAACAACGATCTTTTGAAACGCCACATGGTTCGCCACGATGACACGAGGCCTTTCGAGTGCGAAATTTGCGAAAAGGCGTTCCAGAGGAAGAAGACGTTGGATATACACATGAGGATACACACGAATGATAAGAGGTATGTGTGTAAGGAGTGCGATAGGGCTTTCGTTCAGTTGACGAGTTTGAACTTGCATGTGAAGTTGCATCACGGAGAGGCCGGGGGTGCCGAAGAGGTTGGAGGGTCCGAAGAGGCCTCTTGGGATTAA
Protein Sequence: MPFKWYLNRYRCFYCDETFIDCSKLKEHTKTHDEVKLNKILKRIGCHSRIKWDISEISCKLCPKSIQNFDHYTNHLSEAHDLEIDRDVFDKCCYIFNLSDDGMVCIECCESFNFFGPLLRHVNKFHNNAQKYVCDYCGLAFTLKGTIKHHIRNVHTDLKTTCKFCGKYFKNKVCLANHNRNAHKTDEEARLAEKHRKDELTKFITIILENSSIVPFRWAANKYMCFYCCYSFVESGRLKEHTNEEHKGANLKNVLRTLVGSSRIKLDTSEIFCTICGLQFLVFNDFVHHLDSLHDFKFNKEIVNSIFTFHLSDDILFCQECAQEFRFFGTLLKHAHKFHNKFRTFLCEMCGQGFVAYANMISHMRNVHTFTQGLKCRKCDKEFRNTYSLSTHCEKVHRTDMLKCPKCPEILPSQYFKKRHLALVHDVKKLQFRCDQCDMLFTMKSRLVQHKQRIHLKQKTVACEVCGFKVFNNDLLKRHMVRHDDTRPFECEICEKAFQRKKTLDIHMRIHTNDKRYVCKECDRAFVQLTSLNLHVKLHHGEAGGAEEVGGSEEASWD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00173483;
90% Identity: iTF_01094311;
80% Identity: -