Olat017156.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oligia latruncula
Gene Symbol
Rfx2
Assembly
GCA_948474745.1
Location
OX419686.1:18660303-18682147[+]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.2e-37 1.3e-33 115.7 0.0 3 78 226 301 224 302 0.97
2 2 1.1 1.3e+04 -2.8 0.0 24 33 637 646 622 653 0.69

Sequence Information

Coding Sequence
ATGTCTGAGATGGGCTTTGAGAATGTGTTCTATTTAGAGAACTTTGAGTGCGCCGGCGACGAGGTACTGGTAGAGTCGTCGCCGCCTGCATCACCGGACATGGCAGCGCGGCTCGCGGCTCCTGCACAGGGTGGCGCGGGCGGCGGTGCCTCGCCGAGCGCTGTGCGTGACCTCATCGTAATACCGGAAATACCCGACTCCATACATTTGCAGCACGCTATGCAACAGGTATCGAGTACGGTGGTAGAAGTGAATGGCGACAGTTCCGGGCATTCCAGTCCCACAGCGGAGGGACAGCACACTTACATCACCGTAGCAATGCAAGGCGCATGGGCACAGCCAGGCACCCACGTGAAGATTGAGGAGCAAAGTGACCAAGAAAGCGAGGGCGGCAACGGCGTCAACTATCACGTGCAATATGTTACGGAGCCGCAGGAGATCTACACACAAGGTCACCCGACGCATATGGATTCCTTGCGCTCCTATCCAGTGTACGGAGTGACGACTGTGGGCAATGGAACGAGCGCGGAAGGCACTTCTGCAGACAACGGCTGGGGCGGAGCTTCCTCCGCAGAATACACCGCTTATGGTGTCGTGGTGGCCGGCGACGAGGCGTCGGCGCCGGCGTCCCCGGCCACCCCGGCGGGCGCGCCCGCGCCGCCCCGCATGCCGCCCGCTACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAGGGCGTTTCCCTCCCTCGTTCAACACTCTACGCGCACTACCTCCGCCACTGCGCCACCCACCGCTTGGAACCAGTCAACGCGGCTTCCTTCGGAAAACTCATTCGCTCCGTCTTCATAGGCCTTCGCACCCGAAGACTGGGGACTAGGGGGAACTCCAAGTATCACTACTACGGCATTAGGGCGAAGCCCGGCGTGGAGCACGATCATAGTGAGAGTGACTTGAATGATCAGCAGGATAATGTGGATGATAAGACCGACGTGCTGGATCATCAGGAGGGTAGATCCCGCGAGCGCTCCCGCGACTCGGCGAGCCCGAGCCACGCGCACCGCCAGTACCTGGGCGCCGTGTCGCCGCCCGAGCCGCCGCCCCTCGCCATACACCCGCTGCCCGACGACGTGCCGCCCGAAGCACTCAATGCGTTGAGGAGACATCACAGCTCACACGGCGCGGAGTTCCTGTCGGCCGTGGCGGCGCTGGACACGGGCGCGGTGGAGCGCGCCCGCCGCGCCTTCTGGCGCCGGCCGCCGGCCGCGCTGTGCCGCCGCGTGCTGTGCCGGCTGGCGGCGCGGCGCGACGTGGCCGCGTGGCTGCGCGCCGCGGAGATGCAGCTGTACCAGCGCGCGGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCCGCCGCAGCTCACGCAGGCGATCCGCAACTTCGCCAAGAGCTTGGAGGCCGCGCTGGCGGCGGGCGCGGGGGGCGCGCCGGCCGCCAGCGCGCGCGCCCAGGCCTCCTGTGCCGCCGCGCTGGCGGCCGCGCTGCGCCGGTACACGTCCCTCAACCATCTGGCGCAGGCCGCGCGCGCCGTGCTCAACAACCATCTGCAGATACACCAGATGTTAGCAGACCTGAACCGCGTGGACTTCCGCGTAGTGCGCGAGCAGGCGGCGTGGGCGTGCTCCTGTGCCAGCGCGGCCACTGCGCACAAACTGGAAGCGGACTTCAAGGCCACGTTAGGACGAGGAGCTTCTCTAGAGCAATGGGCTGGTTGGCTGGAAGGCTGCGTACGGACCGCCCTAGCTCCACACGAGCGTCGGCCTGACTACACGGCGAGGGCGCGGCGACTACTGCTGGACTGGTCCTTCTACTCATCGCTCGTCATCAGAGAACTTACTCTCAGGTCGGCGGCGTCGTTCGGCTCGTTCCACCTGATCCGCCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGTCGCGTGGCCGCGCACCACGACGCGCCGCCCATCTCCGTCATGCAGAGGGCACTCGAACAAGACGAAGAAGAGATCCCCGAGGAGCTGCCTCGCGAGCCGGACGATGACGAACAGGAGTGGGAGTGGGACGACGACGAGGAGGAGGACGAGGAGCCGGAGTGTAAGAAGCAGAAGATAGCCGCCGAGTAG
Protein Sequence
MSEMGFENVFYLENFECAGDEVLVESSPPASPDMAARLAAPAQGGAGGGASPSAVRDLIVIPEIPDSIHLQHAMQQVSSTVVEVNGDSSGHSSPTAEGQHTYITVAMQGAWAQPGTHVKIEEQSDQESEGGNGVNYHVQYVTEPQEIYTQGHPTHMDSLRSYPVYGVTTVGNGTSAEGTSADNGWGGASSAEYTAYGVVVAGDEASAPASPATPAGAPAPPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCATHRLEPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKPGVEHDHSESDLNDQQDNVDDKTDVLDHQEGRSRERSRDSASPSHAHRQYLGAVSPPEPPPLAIHPLPDDVPPEALNALRRHHSSHGAEFLSAVAALDTGAVERARRAFWRRPPAALCRRVLCRLAARRDVAAWLRAAEMQLYQRAVELLLPDVLRPIPPQLTQAIRNFAKSLEAALAAGAGGAPAASARAQASCAAALAAALRRYTSLNHLAQAARAVLNNHLQIHQMLADLNRVDFRVVREQAAWACSCASAATAHKLEADFKATLGRGASLEQWAGWLEGCVRTALAPHERRPDYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAAHHDAPPISVMQRALEQDEEEIPEELPREPDDDEQEWEWDDDEEEDEEPECKKQKIAAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00448753;
90% Identity
iTF_01092801; iTF_00726019; iTF_00951527; iTF_00851422; iTF_00808837; iTF_00809793; iTF_00273348; iTF_00745360; iTF_00448753; iTF_00374904; iTF_01532762; iTF_00907614; iTF_00906793; iTF_00905846; iTF_00446847; iTF_01339679;
80% Identity
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