Doo004496.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dicycla oo
Gene Symbol
Rfx2
Assembly
GCA_948252095.1
Location
OX411714.1:30498164-30551179[+]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.1e-37 2.2e-33 115.8 0.0 3 78 205 280 203 281 0.97
2 2 1.1 2.1e+04 -2.7 0.0 24 33 617 626 602 633 0.69

Sequence Information

Coding Sequence
ATGTCTGAGATGGGCTTTGAGAATGTGTTTTATTTAGAGAACTTTGAGTGCGCCGGAGACGAGGTACTGGTGGAGTCGTCGCCGCCTGCCTCACCGGACATGGCAGCGCGGCTCGCGGCTCCTGCACAGGGTGGCGCGGGCGGCGGTGCCTCACCGAGCGCTGTGCGTGAGCTCATCGTAATACCGGAAATACCCGACTCCATACATTTGCAGCACGCTATGCAACAGGTATCGAGTACGGTGGTGGAAGTGAACGGCGACAGTTCCGGGCATTCCAGCCCCGCAGCAGAAGGACAGCACACTTACATCACTGTGGCGAGCGAGGGCGGCAACGGAGTCAACTATCACGTGCAATATGTTACGGAGCCGCAAGAGATCTACACACAAGGTCACCCGACGCATATGGATTCCTTGCGCTCCTACCCAGTGTACGGAGTGACGACAGTGGGCAATGGACCGAGCGCGGAGGGCACGTCTACAGACAACGGCTGGGGCGGAGCCTCTTCCGCAGAATACACCGCTTATGGCGTCGTGGTGGCAGGCGACGAGGCGGAGGCGCCGGCGTCCCCCGCCACGCCGGCCGGTGCGCCCGCGCCGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAGGGCGTCTCTCTCCCCCGCTCAACGCTCTACGCGCACTACCTCCGTCACTGCGCGACTCACCGGTTGGAACCAGTCAACGCGGCTTCCTTCGGAAAACTTATCCGTTCAGTCTTCATAGGCCTTCGCACTCGAAGGCTGGGGACTAGAGGGAACTCCAAGTATCATTACTACGGGATCAGGGCGAAGCCCGGTGTGGAACATGATCACAGTGAGAGTGATTTGAATGAGCAGCAGGATAATGTGGATGATAAGACCGATGTGCTGGATCACCAGGAGGGTAGATCCCGCGAGCGTTCCCGCGAGTCTGCGAGCAGTCCCAACCACGCGCACCGCCAGTACCTGGGCTCTGTGTCGCCGCCCGAGCCGCCGCCCCTCACTATAAATCCACTACCCGACGATGTGCCGCCCGAAGCACTCAATGCGTTGAGGAGACATCACAGGGAGCACGGCGCGGAGTTCCTGTCAGCCGTGGCGGCGCTGGACACGGGCGCGGTGGAGCGCGCGCGGCGCTCGTTCTGGCGCCGCCCGCCGCCTGCGCTGTGCCGCCGCGTGCTGTGCCGGCTCGCTGCCCGGCGAGACGTGGCCGCCTGGCTGCGGGCCGCCGAGATGCAGCTGTACCAGCGTGCAGTCGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCCGCCGCAGCTCACACAGGCGATCCGCAACTTCGCCAAGAGTCTCGAAGGCGCGCTAGCGGCGGGTGCGGGCGGCGCGCCGGCCGCTGCCGTGCGCGCGCAGGCCTCCGCGGCCGCGGCGCTGGCGGCCGCGCTCAGGCGCTACACCTCGCTCAACCATCTCGCACAGGCCGCGCGCGCCGTGCTCAACAACCATCTTCAGATACACCAGATGCTAGCGGACCTGAACCGCGTGGACTTCCGCGTGGTGCGCGAGCAGGCCGCGTGGGCCTGTTCCTGCGCCAGCGCGGCCACTGCGCACAAACTGGAAGCGGACTTCAAGGCCACGTTAGGACGAGGAGCCTCTCTAGAGCAATGGGCCGGTTGGCTGGAAGGCTGCGTACGGACCGCCTTAGCTCCACACGAGCGTCGGCCTGACTACACGGCGCGCGCGCGGCGCCTGCTGCTGGATTGGTCCTTCTACTCGTCCCTCGTCATCAGAGAACTTACTCTCAGGTCTGCGGCGTCGTTCGGCTCGTTCCACCTGATCCGCCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCGCGTGGCCGCGCACCACGACGCGCCGCCCATCTCCGTCATGCAGAGGGCCCGAGAACAAGATGAAGAAGAGATCCCCGAGGAGCCGCCTCGCGAGCTGGACGATGACGAGCAAGAGTGGGAGTGGGATGACGACGAGGAAGAGGACGACGAGCCAGAGTGTAAGAAACAGAAGATAACCGCCGAGTAG
Protein Sequence
MSEMGFENVFYLENFECAGDEVLVESSPPASPDMAARLAAPAQGGAGGGASPSAVRELIVIPEIPDSIHLQHAMQQVSSTVVEVNGDSSGHSSPAAEGQHTYITVASEGGNGVNYHVQYVTEPQEIYTQGHPTHMDSLRSYPVYGVTTVGNGPSAEGTSTDNGWGGASSAEYTAYGVVVAGDEAEAPASPATPAGAPAPPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCATHRLEPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKPGVEHDHSESDLNEQQDNVDDKTDVLDHQEGRSRERSRESASSPNHAHRQYLGSVSPPEPPPLTINPLPDDVPPEALNALRRHHREHGAEFLSAVAALDTGAVERARRSFWRRPPPALCRRVLCRLAARRDVAAWLRAAEMQLYQRAVELLLPDVLRPIPPQLTQAIRNFAKSLEGALAAGAGGAPAAAVRAQASAAAALAAALRRYTSLNHLAQAARAVLNNHLQIHQMLADLNRVDFRVVREQAAWACSCASAATAHKLEADFKATLGRGASLEQWAGWLEGCVRTALAPHERRPDYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAAHHDAPPISVMQRAREQDEEEIPEEPPRELDDDEQEWEWDDDEEEDDEPECKKQKITAE