Oiva009037.2
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000006.1:3007113-3014686[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.4e-40 6.2e-36 125.7 5.8 20 140 1 113 1 114 0.91 2 3 3.9e-31 9.8e-27 95.5 3.4 119 268 111 262 109 281 0.88 3 3 2 5.1e+04 -7.1 17.3 1 49 282 329 282 356 0.70
Sequence Information
- Coding Sequence
- ATGCGGGAGCTGGAGCGGCAGCAGCGAGAGCAGGAGGACCATGCCGACAAGGCGTATGATATGTATTCAGAGACAGTGGGGCGACGCGCAGGCGGCCGGCTAGCGGCGCTGAGCCCCAGCGCGATGCATTCCCCGCGACGCAGTTCAGAGGACTCGGACGACGTGCTCAGCATCAAAGACCTCAGGCATGAGCTCAAAGAAGTGGAGGAGAAGTTTCGGAAGGCGATGATACTGAACGCGCAGCTGGACAACGACAAAGCAGCGCTCGGCTACCAGCTGGAACTTCTCAAAGACAGGATAGAGGAGCTGCAGGAAGAGTATGTGCAGCTGCAGCTGGAACTCCTCAAAGACAGGATAGAGGAGCTGCAGGAAGAGTACGCGCTACTGCAGCGCGAACACCGAGAGAAGTGCTCATGCTACGAGAGGTTAAAGCGCGAGCACGCGGCGCTGGAGCGCGAGGTGACGCTGGCGCGGGACGCGGTGCGCGCGCGggacgcggcggcggcggcggcgggacGCGCGTTCGTGGAGGCGGCCAGCGCGCCCGGCGCGGACGCGGGCGAGGCGTGCGGCAGCGTGCCGCCGCTGGCGCTCGTGTCGCACGAGTCGGAACAGCTGCTGAACGAAGCGGGCGAGGGGACACTCGACGTACGGCTGGAGAGGCTGGTGGGCGCGAAGGCGGCGCTGGAGAGCGAAGTGCGCAAGCTGAAGCTGCAGCTGAAcgacgagcgcgcggcgcggcagAACGGCGTCGCCTCGCACCTGGACCGCGACCACGACACCGAGCTGGAGACACTACGCAAGTCCGTGACGGAGGCGAAGGGGCGCGCGGCTCGCGCCGAGGCCGAGGCGGCGCTGCAGGCGGCGGCCGTGGCTCGCCTCGAGGCGCAGGTGGCGCGGCTGCGCGCGAGGCAGGACCACCAGGACGAGCACGAGGAGATGCTGAAGCAGGAGCGGAGGAAACTGCAGAGAGAGGCGCGGGAAGCTCTCAACCGTGTGGAAGAGTTGGAGACAGAGAACAGCCACCTCACGAAGCGGCTCGATAAGCTCAAGAACGCCAAGTCCGCGCTACTCAAGGACCTGTGA
- Protein Sequence
- MRELERQQREQEDHADKAYDMYSETVGRRAGGRLAALSPSAMHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYVQLQLELLKDRIEELQEEYALLQREHREKCSCYERLKREHAALEREVTLARDAVRARDAAAAAAGRAFVEAASAPGADAGEACGSVPPLALVSHESEQLLNEAGEGTLDVRLERLVGAKAALESEVRKLKLQLNDERAARQNGVASHLDRDHDTELETLRKSVTEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843553;
- 90% Identity
- -
- 80% Identity
- -