Oiva038913.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000026.1:9547460-9547927[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-08 2.7e-06 28.4 0.0 1 35 16 51 16 58 0.90
Sequence Information
- Coding Sequence
- ATGAGTTCTTGGGAAGGTagtaagaaaaaagaaaagaaaacataCACAGAAGAAGATTTAAAGAAAGCATTAAGTGACATTCGTGAGAAGAAAAAATCGATAAGACAAATATGCAAAGAATATGCTATTCCCAAGACCACATTATTGGACAAAATCAGTGGGCGCAGACCAGATGGAGTTAAGAAACCGGGACCAGAACCAGCGCTAAGAGTGGATGGTGAAAAAAAGGTAGTTGAATGGCTTCTTAATATTTCCAAATGTGGATTTCCAGTGAAAAAACAGGAATTGTTGGATACTGTTCAGAAAATAATTCGTGATGGggggtttaaaaataaattcaaagatGATCGCCCCGGTCAAAAGTGGTTTGAAAAATTCTTGGCCAGAAATAAAGAAGTCTCACTTAAAAATGCGGAAGGTATTAATAAAGCTAGAGCCCAAGTCACAGAAGAGTCGATCAGATTGTAG
- Protein Sequence
- MSSWEGSKKKEKKTYTEEDLKKALSDIREKKKSIRQICKEYAIPKTTLLDKISGRRPDGVKKPGPEPALRVDGEKKVVEWLLNISKCGFPVKKQELLDTVQKIIRDGGFKNKFKDDRPGQKWFEKFLARNKEVSLKNAEGINKARAQVTEESIRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00164289; iTF_00934692; iTF_00164290; iTF_00934690; iTF_00164291; iTF_00934691; iTF_00934693; iTF_00934694; iTF_00933680; iTF_00933682; iTF_00933683; iTF_00933684; iTF_00404748;
- 90% Identity
- iTF_00404748;
- 80% Identity
- -