Basic Information

Insect: Odontomyia ornata
Gene Symbol: -
Assembly: GCA_963969285.1
Location: OZ017739.1:420476127-420482209[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.026 3.7e+02 4.5 0.1 20 45 261 286 254 293 0.85

2 11 0.34 4.8e+03 0.9 0.1 21 48 290 317 286 322 0.83

3 11 0.42 6e+03 0.6 0.1 26 44 334 352 330 356 0.87

4 11 0.059 8.4e+02 3.3 0.0 21 43 357 379 354 384 0.82

5 11 3.7e-05 0.52 13.6 0.2 18 52 382 416 379 418 0.92

6 11 0.13 1.9e+03 2.2 0.0 27 52 421 446 417 447 0.91

7 11 0.6 8.6e+03 0.1 0.0 23 44 522 543 514 547 0.85

8 11 0.018 2.5e+02 5.0 0.0 21 45 548 572 545 579 0.83

9 11 0.038 5.5e+02 3.9 0.1 18 52 573 607 571 608 0.89

10 11 0.0021 29 8.0 0.1 20 45 603 631 596 634 0.84

11 11 1.1 1.5e+04 -0.7 0.1 22 45 665 687 659 694 0.69

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.026	3.7e+02	4.5	0.1	20	45	261	286	254	293	0.85
2	11	0.34	4.8e+03	0.9	0.1	21	48	290	317	286	322	0.83
3	11	0.42	6e+03	0.6	0.1	26	44	334	352	330	356	0.87
4	11	0.059	8.4e+02	3.3	0.0	21	43	357	379	354	384	0.82
5	11	3.7e-05	0.52	13.6	0.2	18	52	382	416	379	418	0.92
6	11	0.13	1.9e+03	2.2	0.0	27	52	421	446	417	447	0.91
7	11	0.6	8.6e+03	0.1	0.0	23	44	522	543	514	547	0.85
8	11	0.018	2.5e+02	5.0	0.0	21	45	548	572	545	579	0.83
9	11	0.038	5.5e+02	3.9	0.1	18	52	573	607	571	608	0.89
10	11	0.0021	29	8.0	0.1	20	45	603	631	596	634	0.84
11	11	1.1	1.5e+04	-0.7	0.1	22	45	665	687	659	694	0.69

Sequence Information

Coding Sequence: atgaatgtgGAGCTCACCCAAGTGGTCAATACAACTTTATCATCAAAATCAGCTATTAATGACGAAGAAATACAATTATTCATTGAAGCCGGGTACAAGCCAGAGGATCTTGCAACAGTTCTTGATGCTAATAACTCGACTGTAGCAAAATCGGACACAGTAGAGGGTTTAATATTTGAAACAGAACCTGTAACAGTGGTAAAACCGTCTGATAATGATGAATCGATTGAACAATCGGACAAAACAGAAGATATCTGCTATGATGATAATCTCGAATCCAACGatcaagaaaattatattttagaaCAATATCACATTGAAGAAGAAAGCACTTATTCGGATAAACTCGAAAATAACGACGAAGATTCGCAGGAAATTGAATTTATCAAACCGAAAAAACAATCAGCACCAAGTACAGAGATTAGTCCTGAAGCTGATCAAAGTTTAACAAAAGTTGGTGAATCGATACAAGAGTTGCAACCATATATTTGCGATGAATGTGGTAAAAATTTTAATGATAAGAAAGATTGCGAAGATCATATACTTTCGATACATGGCCAGAAAACATTTATTTGTGAATATTGTTGTAAAAGTTTTGATTCCATAAGTTTGTTAGATTCCCATTTATTAGTTCACGCTAGCAAGAAGGGCCATAAGTGTGAAGAATGTGAAGAATGCTTTGGCTCTAAAGATAAATTAATGGTAGGTTGGATTTTGAGTCTGATACCATACAGTTCTCGTACATTCTGTGTTTCGTTGCAGCAACATATGAGCATTCATACGGGAGAGCAACCATTCAAATGCAACGTATGCAATAAGACATTTGCTCAGAATAATTCGCTTGTATATCACATGAGAGTACACACTGGTGAAAGGCCTTTCGAATGTGATCAATGTGGAGCGAGGTTCCGTTTAAAGGGTAGCTTAAAAcaTCATATGCGTGTTCATTTAGAGGGAAAACCAGTAAACAAAAAACCCATTATTGGAGGGAAAGTTTTTACTTGCACAGAATGTCAAGCCGTCTTTAAAAGAAGATCAGTGTTAAAGGAACATATGTTCATTCATACAGGCGAGCGCCCTTTCACATGTGATGTTTGCGGTAGAGGATTTACACAAAGTCATTCTTTGATATTCCATGCAAGGCGACACACTGGGGAAAAACCGTACACTTGTGAAACTTGTGGCTCAGCCTTTCGCCATGCAAGTGGATTAAAACGTCATGTTTTTATCAAACATTCTAGCCATCCAACCGATTTTAAATGCGATGAATGCTTTGCAACTTTTCGATCTAAAGAAGATTTAGACGTTCATAAAAGAGAACGCCATTTACAAAATCCTATCAATGATGAAAATGAAGAAACCTCCAAAGAAAATCAACAGCAAGATCAAAAAATGTCTAGTCAAGAaatcacaattataaattcaaATCCGCCGAACGATAGTAACCCACTGGCAGATGTAGAAAAAGTTATGGAAATTGGCATGTATACTTGTGTTCAATGTCGTGCCGGATTTGAAACTCAAGCACAATATGCAGCACATATGCGAAATCATGGTGAAATTAAGCCTTTTCGGTGTGAAATATGTGGCAATGGCTTTACTCAGAATGGTTCATTGAAACAACATATGCTGATTCATACTGGCGAACGCCCTTACACCTGTGATATATGTGGGAGAGGTTTCACACAAGGGAAATCTTTAACCTTTCATATGCGAAGACACACGGGTGAGAAACCGTTTGAATGCGATCTATGCGACTCAAAATTTCGGTTGAAGTATTCGTTGAAGTGCCACATAGATAAGCATCATTCTGACCAACCAGCAAAAGTACATATATGTTCAATCTGTCACAAAGTGTTcaattcaaaacaaaacttggATAATCATATGAAAAAGCATGATGAAGATAGTTTggaaatgaaatgtgaaaagtgTGATAAATCATACTCATCTAAAGTGAGTTTGGAAGCACATCTTCGTACTCATACAGAAGAGAAACCATTCAAATGTGATGAATGTGGAAAAGAATTTATTCGAAAATGCTCACTCCGACGACATGAAAAAACTCACATGGGAAAGGAAGAGTGTTGA
Protein Sequence: MNVELTQVVNTTLSSKSAINDEEIQLFIEAGYKPEDLATVLDANNSTVAKSDTVEGLIFETEPVTVVKPSDNDESIEQSDKTEDICYDDNLESNDQENYILEQYHIEEESTYSDKLENNDEDSQEIEFIKPKKQSAPSTEISPEADQSLTKVGESIQELQPYICDECGKNFNDKKDCEDHILSIHGQKTFICEYCCKSFDSISLLDSHLLVHASKKGHKCEECEECFGSKDKLMVGWILSLIPYSSRTFCVSLQQHMSIHTGEQPFKCNVCNKTFAQNNSLVYHMRVHTGERPFECDQCGARFRLKGSLKHHMRVHLEGKPVNKKPIIGGKVFTCTECQAVFKRRSVLKEHMFIHTGERPFTCDVCGRGFTQSHSLIFHARRHTGEKPYTCETCGSAFRHASGLKRHVFIKHSSHPTDFKCDECFATFRSKEDLDVHKRERHLQNPINDENEETSKENQQQDQKMSSQEITIINSNPPNDSNPLADVEKVMEIGMYTCVQCRAGFETQAQYAAHMRNHGEIKPFRCEICGNGFTQNGSLKQHMLIHTGERPYTCDICGRGFTQGKSLTFHMRRHTGEKPFECDLCDSKFRLKYSLKCHIDKHHSDQPAKVHICSICHKVFNSKQNLDNHMKKHDEDSLEMKCEKCDKSYSSKVSLEAHLRTHTEEKPFKCDECGKEFIRKCSLRRHEKTHMGKEEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01089294;
90% Identity: iTF_01089294;
80% Identity: iTF_01089294;