Oorn067119.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:377932099-377933546[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-113 8.3e-108 363.4 34.9 1 299 9 293 9 294 0.95
Sequence Information
- Coding Sequence
- ATGGATTCAATTATTCAATTACAGGCCGAGGCAAGATTAGCAGCGCGTCGTCAAGCGCGTGCAGAAGCACGCGAAATTCGAATGCGAGAGCTGGAGCGGCAACAGAAAGAACAGGAACAAAATGCCGACCGGGTGTTTGATATGCAAACAGCGGCTGGGATTGATCCTTTGTCGCGATCCCGTCACACCTTGTCGGCAGGATCGGCACGAGGGAGCTCCTCATTGTCATCACGACGTAGTAGTGAAGATTCGCTGGAGGAGGAAGGTCGAAGCTTACGAGATATTCGACATGAACTTAAGGAAGTCGAGGAACGATTTCGAAAGGCAATGATCGCTAATGCTCAACTAGATAACGAACGAGCATCACAATCGTATCAAATACAATTGCTTAAAGATAAACTAGAAGAAATGGAAGAGAATTTTGCACAGTTACAACGGGAATATAAGGAAAAATGTCGCGATCATAATGCTTTAAAACGAAACTTAGATAAGGTCGAGGAAGAATTGAAATTAGTGCGGGGACAACTAGAAGAACGAGATACTCTTATAGCCGAGCAAGGTTTAGTGATAGTTATGATAGAAAATGAAGATGGCTCAGATGCCAAACGAGCTCTAGTCACTGTAGATAACGCACAACTATTAGGATCAGTTCAAGGTTCATTAGATGTTCGACTTAAAAAATTCAGCGAAGAAAAACAAGAGTTGCAAAAAGAAGTCAACAGTCTGCAACAACAATTGGCCGAGATTAAAACACAGCGGAAAGGCGGTTCAATGAATGGTCCAGTTGGAAACGATGATGAATGGGATGCGCAAAGAGAAGCCAACAAGCTATTATCTGAATATAAATATAAGCTACAAAAAGCTGAACAAGAAATTGCTAGTCTACAAGCCAGCTTAGCGCGATCAGAAACTCAAGTTATACGATATAAAAGTACAGCAGAAGCGGCTGAAAAGGCTGAAGCTGAATTGAAAATTGAGCGTAGAAAACTACAACGAGAGCCTTTAGTTATTGTTGATTGGGATGAATGTCATTGCCAATGA
- Protein Sequence
- MDSIIQLQAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLSRSRHTLSAGSARGSSSLSSRRSSEDSLEEEGRSLRDIRHELKEVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEENFAQLQREYKEKCRDHNALKRNLDKVEEELKLVRGQLEERDTLIAEQGLVIVMIENEDGSDAKRALVTVDNAQLLGSVQGSLDVRLKKFSEEKQELQKEVNSLQQQLAEIKTQRKGGSMNGPVGNDDEWDAQREANKLLSEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQREPLVIVDWDECHCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203545;
- 90% Identity
- iTF_00999586; iTF_00203545;
- 80% Identity
- -