Obru009229.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- -
- Assembly
- GCA_010583005.1
- Location
- NW:2305167-2308117[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00016 0.47 10.0 0.1 23 48 157 182 148 186 0.91 2 8 0.52 1.5e+03 -1.2 0.0 26 46 188 208 183 211 0.87 3 8 0.0085 24 4.5 0.0 24 48 269 293 265 296 0.90 4 8 0.0016 4.5 6.9 0.0 24 48 380 404 377 407 0.91 5 8 1.4 4e+03 -2.6 0.0 27 46 411 430 409 432 0.81 6 8 0.21 6e+02 0.0 0.0 24 48 491 515 488 517 0.82 7 8 0.058 1.6e+02 1.8 0.0 24 48 602 626 600 629 0.88 8 8 1.8 5.1e+03 -2.9 0.0 27 46 633 652 631 654 0.81
Sequence Information
- Coding Sequence
- ATggaaaatatgtttgaaattaTAGAGGACATCATCCTTCAGGAAAAATTGAATACTCATGCAAAGAATGTCGATGAACTATTTTGTGGTTCCTACGATAGTGTGTTACCTCGTGAATCGATTCAGAACATATCAATTTCCAAAAATAGTAATACTTCGGTTACGGATCGTCCCGAAGCCTATGATGTCAACTCAGAAATGATCGCCTCGATGGAGCAGAAGAACTCTTGGCCCTGCACTGTATGCGGCAAAATTTTCATGTACAAGATATCCCTTTTGAAACACATAAGCTTGAATAATTGCCTGCAATGCAAAATTTGCAACCAGAACTTTGACGTGTTAGAAGAATTTAAACGTCACGGTTGGACGTGTCGTAGACGTCTGACGTGCCGCAAGTGTTCCTTCAAGGCAAGTACATTGAAAGATATGAGTGAACACATGAAATCGGTACACAATACTATCGACGTTAAACCGATACCTTGTGACATATGCCTCAAGAATTTTGCGACGCAACGTAATCTTAAGAGACATAAGGAAACTGTTCATGTGGAGACGTTGCTGAAATGTCCTGCATGCGGCAGAAAGTTCCGATACAATGTTTCCTTCAAGAAACACATAAACTTGAATAATTGCCTGCAATGCCAAATTTGCGACCAGAACTTTGacgtgttaaaaaaatttattcgtcaCTATACCATGTGTCTTAAATCTGAGTATACCTGTCGCGAGTGTTCTTACAAGACACATACAAAGAACTGTTTGATTAAACACATGAAATCAGTACACTATGGTACCGACGTTTTACCAATATTTTGTGACATATGCTTCATGAGTTTTGCGACGCAGACTTCTCTTAAGAGACATAAGGAAACAGTTCATGTGGACACGTTGATAAAATGTCCTCCATGCGGCAGAAGATTCCAATACAAGGCAAACTTCGAGAAACACATAAACTTGAATAATTGCCTGCAATGCCAAATTTGCGACCAGAAGTTTGACGtgttagaaaaattaattcgtCACTATACAATGTGTCTTAAACCTGAGTATACCTGTCGCGAGTGTTCTTACAAGACACGTACAAAGAACTGTTTGATTAAACACATGAAATCAGTACATTATGGTATCGACGTTTTACCGATATTTTGTGACATATGCTTCACGAGTTTTTCGACGCAAAGAAGTCTTGTGAGACATAAGGAAACAGTTCATGTGGACACGTTGATGAAATGTCCTGCATGCGGCAGAAAGTTCCGATCCAAGGTTTTCTTCAAGAAACACATAAACTTGAATAATTGCCTGCAATGCCAAATTTGCGACCAGAAGTTTGACgtgttagaaaaatttattcgtcaCTATACAATGTGTCTTAAACCTGAGTATACCTGTCGCGAGTGTTCTTACAAGACACGTACAAAGAACTGTTTGATTAAACACATGAAATCAGTACACTATGGTACCGACGTTTTACCAATATTTTGTGACATATGCTTGATGAGTTTTGCGACGCAGAGTACTCTTAAGAGACATAATCAAACAGTTCATGTGGACACGTTGATGAAATGTCATGCATGCGGCAGAAGTTTCCAATCTAAGGTTTCCTTCGAGAAAcacataaatttgaaaaattgccTGCAATGTCAAATTTGCGACCAGAACTTTGACgagttagaaaaatttattcgtcaCTATACCATGTGTCTTAAACCTGAGTATACCTGTCGCAAGTGTTCTTACAAGACACATACAAAGGACTGGTTGATTAAACACATGGAATCAGTACATTATGGTATCGACGTTTTACCGATATTTTGTGACATATGCTTCACAAGTTTTTCGACGAAGGGTAATCTTATGGCACATAAGGAAAGATTTCATGTGGGCACGTTGATGAAATGTCCTGCATGCGGCAGAGAGTTCCGATCCAAGGTTTTCTTCAAGAAACACATAAACTTGAATAATTGCCTGCAATGCCAAATTTGCGACCAGAACTTTGACGTGTTAGAAAAATTNNNNNNNNNNGTTTACAGCTCTCTTTGCGTTGCACTTCGTGACGAAGTATCTTTCTACGAATGTTACTattga
- Protein Sequence
- MENMFEIIEDIILQEKLNTHAKNVDELFCGSYDSVLPRESIQNISISKNSNTSVTDRPEAYDVNSEMIASMEQKNSWPCTVCGKIFMYKISLLKHISLNNCLQCKICNQNFDVLEEFKRHGWTCRRRLTCRKCSFKASTLKDMSEHMKSVHNTIDVKPIPCDICLKNFATQRNLKRHKETVHVETLLKCPACGRKFRYNVSFKKHINLNNCLQCQICDQNFDVLKKFIRHYTMCLKSEYTCRECSYKTHTKNCLIKHMKSVHYGTDVLPIFCDICFMSFATQTSLKRHKETVHVDTLIKCPPCGRRFQYKANFEKHINLNNCLQCQICDQKFDVLEKLIRHYTMCLKPEYTCRECSYKTRTKNCLIKHMKSVHYGIDVLPIFCDICFTSFSTQRSLVRHKETVHVDTLMKCPACGRKFRSKVFFKKHINLNNCLQCQICDQKFDVLEKFIRHYTMCLKPEYTCRECSYKTRTKNCLIKHMKSVHYGTDVLPIFCDICLMSFATQSTLKRHNQTVHVDTLMKCHACGRSFQSKVSFEKHINLKNCLQCQICDQNFDELEKFIRHYTMCLKPEYTCRKCSYKTHTKDWLIKHMESVHYGIDVLPIFCDICFTSFSTKGNLMAHKERFHVGTLMKCPACGREFRSKVFFKKHINLNNCLQCQICDQNFDVLEKXXXXVYSSLCVALRDEVSFYECYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01087370;
- 90% Identity
- iTF_01087370;
- 80% Identity
- iTF_01087370;