Obru009229.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- -
- Assembly
- GCA_010583005.1
- Location
- NW:2305167-2308117[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00062 0.04 13.8 0.0 2 20 78 96 77 98 0.93 2 22 0.0096 0.61 10.0 0.2 2 19 103 120 102 121 0.96 3 22 0.17 11 6.1 1.1 2 23 129 151 128 151 0.96 4 22 1.5e-05 0.00093 18.9 0.4 2 23 160 182 159 182 0.95 5 22 0.00012 0.0075 16.1 0.4 2 21 188 207 187 208 0.94 6 22 0.015 0.97 9.4 0.3 2 20 213 231 212 233 0.92 7 22 0.024 1.5 8.8 6.7 1 23 239 262 239 262 0.98 8 22 6.1e-05 0.0039 16.9 0.7 3 23 272 293 270 293 0.96 9 22 0.00095 0.061 13.2 0.1 2 21 299 318 298 319 0.94 10 22 0.0029 0.19 11.7 0.1 2 20 324 342 323 344 0.93 11 22 0.00091 0.058 13.3 4.9 1 23 350 373 350 373 0.98 12 22 6.7e-05 0.0043 16.8 0.8 3 23 383 404 381 404 0.96 13 22 0.00025 0.016 15.0 0.6 2 21 410 429 409 430 0.95 14 22 0.0091 0.58 10.1 0.2 2 20 435 453 434 455 0.92 15 22 0.00091 0.058 13.3 4.9 1 23 461 484 461 484 0.98 16 22 6.9e-05 0.0044 16.8 0.5 3 23 494 515 492 515 0.96 17 22 0.00038 0.024 14.5 0.8 2 21 521 540 520 541 0.95 18 22 0.016 1 9.3 0.2 2 20 546 564 545 566 0.92 19 22 0.0017 0.11 12.4 2.9 1 23 572 595 572 595 0.97 20 22 4.8e-05 0.0031 17.3 0.7 3 23 605 626 603 626 0.94 21 22 0.0004 0.025 14.4 0.3 2 21 632 651 631 652 0.95 22 22 1.4 92 3.2 0.0 2 10 657 665 656 669 0.88
Sequence Information
- Coding Sequence
- ATggaaaatatgtttgaaattaTAGAGGACATCATCCTTCAGGAAAAATTGAATACTCATGCAAAGAATGTCGATGAACTATTTTGTGGTTCCTACGATAGTGTGTTACCTCGTGAATCGATTCAGAACATATCAATTTCCAAAAATAGTAATACTTCGGTTACGGATCGTCCCGAAGCCTATGATGTCAACTCAGAAATGATCGCCTCGATGGAGCAGAAGAACTCTTGGCCCTGCACTGTATGCGGCAAAATTTTCATGTACAAGATATCCCTTTTGAAACACATAAGCTTGAATAATTGCCTGCAATGCAAAATTTGCAACCAGAACTTTGACGTGTTAGAAGAATTTAAACGTCACGGTTGGACGTGTCGTAGACGTCTGACGTGCCGCAAGTGTTCCTTCAAGGCAAGTACATTGAAAGATATGAGTGAACACATGAAATCGGTACACAATACTATCGACGTTAAACCGATACCTTGTGACATATGCCTCAAGAATTTTGCGACGCAACGTAATCTTAAGAGACATAAGGAAACTGTTCATGTGGAGACGTTGCTGAAATGTCCTGCATGCGGCAGAAAGTTCCGATACAATGTTTCCTTCAAGAAACACATAAACTTGAATAATTGCCTGCAATGCCAAATTTGCGACCAGAACTTTGacgtgttaaaaaaatttattcgtcaCTATACCATGTGTCTTAAATCTGAGTATACCTGTCGCGAGTGTTCTTACAAGACACATACAAAGAACTGTTTGATTAAACACATGAAATCAGTACACTATGGTACCGACGTTTTACCAATATTTTGTGACATATGCTTCATGAGTTTTGCGACGCAGACTTCTCTTAAGAGACATAAGGAAACAGTTCATGTGGACACGTTGATAAAATGTCCTCCATGCGGCAGAAGATTCCAATACAAGGCAAACTTCGAGAAACACATAAACTTGAATAATTGCCTGCAATGCCAAATTTGCGACCAGAAGTTTGACGtgttagaaaaattaattcgtCACTATACAATGTGTCTTAAACCTGAGTATACCTGTCGCGAGTGTTCTTACAAGACACGTACAAAGAACTGTTTGATTAAACACATGAAATCAGTACATTATGGTATCGACGTTTTACCGATATTTTGTGACATATGCTTCACGAGTTTTTCGACGCAAAGAAGTCTTGTGAGACATAAGGAAACAGTTCATGTGGACACGTTGATGAAATGTCCTGCATGCGGCAGAAAGTTCCGATCCAAGGTTTTCTTCAAGAAACACATAAACTTGAATAATTGCCTGCAATGCCAAATTTGCGACCAGAAGTTTGACgtgttagaaaaatttattcgtcaCTATACAATGTGTCTTAAACCTGAGTATACCTGTCGCGAGTGTTCTTACAAGACACGTACAAAGAACTGTTTGATTAAACACATGAAATCAGTACACTATGGTACCGACGTTTTACCAATATTTTGTGACATATGCTTGATGAGTTTTGCGACGCAGAGTACTCTTAAGAGACATAATCAAACAGTTCATGTGGACACGTTGATGAAATGTCATGCATGCGGCAGAAGTTTCCAATCTAAGGTTTCCTTCGAGAAAcacataaatttgaaaaattgccTGCAATGTCAAATTTGCGACCAGAACTTTGACgagttagaaaaatttattcgtcaCTATACCATGTGTCTTAAACCTGAGTATACCTGTCGCAAGTGTTCTTACAAGACACATACAAAGGACTGGTTGATTAAACACATGGAATCAGTACATTATGGTATCGACGTTTTACCGATATTTTGTGACATATGCTTCACAAGTTTTTCGACGAAGGGTAATCTTATGGCACATAAGGAAAGATTTCATGTGGGCACGTTGATGAAATGTCCTGCATGCGGCAGAGAGTTCCGATCCAAGGTTTTCTTCAAGAAACACATAAACTTGAATAATTGCCTGCAATGCCAAATTTGCGACCAGAACTTTGACGTGTTAGAAAAATTNNNNNNNNNNGTTTACAGCTCTCTTTGCGTTGCACTTCGTGACGAAGTATCTTTCTACGAATGTTACTattga
- Protein Sequence
- MENMFEIIEDIILQEKLNTHAKNVDELFCGSYDSVLPRESIQNISISKNSNTSVTDRPEAYDVNSEMIASMEQKNSWPCTVCGKIFMYKISLLKHISLNNCLQCKICNQNFDVLEEFKRHGWTCRRRLTCRKCSFKASTLKDMSEHMKSVHNTIDVKPIPCDICLKNFATQRNLKRHKETVHVETLLKCPACGRKFRYNVSFKKHINLNNCLQCQICDQNFDVLKKFIRHYTMCLKSEYTCRECSYKTHTKNCLIKHMKSVHYGTDVLPIFCDICFMSFATQTSLKRHKETVHVDTLIKCPPCGRRFQYKANFEKHINLNNCLQCQICDQKFDVLEKLIRHYTMCLKPEYTCRECSYKTRTKNCLIKHMKSVHYGIDVLPIFCDICFTSFSTQRSLVRHKETVHVDTLMKCPACGRKFRSKVFFKKHINLNNCLQCQICDQKFDVLEKFIRHYTMCLKPEYTCRECSYKTRTKNCLIKHMKSVHYGTDVLPIFCDICLMSFATQSTLKRHNQTVHVDTLMKCHACGRSFQSKVSFEKHINLKNCLQCQICDQNFDELEKFIRHYTMCLKPEYTCRKCSYKTHTKDWLIKHMESVHYGIDVLPIFCDICFTSFSTKGNLMAHKERFHVGTLMKCPACGREFRSKVFFKKHINLNNCLQCQICDQNFDVLEKXXXXVYSSLCVALRDEVSFYECYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01087562;
- 90% Identity
- iTF_01087562;
- 80% Identity
- iTF_01087562;