Oalb006034.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949825065.1
- Location
- OX463840.1:41193076-41225245[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-98 4.1e-94 316.3 24.0 1 300 117 406 117 406 0.93 2 2 0.023 8.6e+02 -0.0 3.2 12 234 443 476 407 481 0.54
Sequence Information
- Coding Sequence
- ATGAAGATGGGTGACAAAAGTGCTAAAATTCTTAAAAGTTCCGAAAGAGATTACGGTGCACAGGACGGTAGTGAAGACGAACAATTTACCGACGGTGACTTCGAAGACTCGGAAGATGATACTATATGCACTAGCACTGACAATGCCAAGGGCGTCCCTTGTAACGAAGCCATCAACGTCAAAGTCGATGTCGATTTTGTCACGAGCGAAGTCCAACGTAAGGGcaatgaaaaaaggaaaatttctgGATCATCTCAGGGAGCTAACGATACATGGAATGGAAACGCCAATTGCAACTGGAATGAGGATTTGAGCATCGTTGGGATACTTGGAAAAGACCATGATAGAgCCGAGGCTCGTTTAGCGGCAAGAAGACAGGCACGTGCCGAAGCAAGGGAGATTCGTATGAAAGAACTAGAGCGACAGCAAAAAGAACAAGAGGAAAATGCCGATAGAATTTATGACATGTATACAGataCGCCTCGAGCGACCCGTGGGGCTCTGCGATCTGGTTCCAGTGCCCCCTCTTCTGGAAACTTCCTCTCCTCCCGAAGAAGTTCTGAAGATTCCCTTGAAGAGATGGGTAGCATCAGGGACATAAGGcaTGAACTGAAAGAAGTGGAAGAGAAATTTAGGAAAGCCATGATATTGAATGCACAGCTGGATAATGACAAGGCATCATTTTCATATCAACTTGAGTTATTGAAGGATAAATTGGAGGATTTGCAAGAACAGTACACACAATTACAGCGAGAGCACAAGGATAAGTGTCGAGCATACGATTCCCTATCCCGTGAGTGCCGTGCCACGCGAGAGGAGCTGGAGCGCTGTGCGGCTGCAGTGCAACTACGGGACCGCTGCATTAGGGAAGCTGGACTGGAGCTGCTGGCCGTAGAGGGTGGAGGTGATGGGGGTACAGGGGCAGCGCTCGTCTCCAGCGCCAGCAAGCAGGCTCTCGAGGCCGCAGGGCAGGGCACACTGGATGTCCGATTGCAAACACTTTGTTCTGAAAGACAAGCTTTGGAGAATGAAGTGCGCCAACTAAAATCCCAGCTTGAAGAAGAGAGATCAAAGAAAAAATCCAACATACACAACTCACATAATGGGCCAGTGAACGGGTCAGACAGTGATTCTGATTTCGATACTCAGAGAGAAAATTCAAAGCTTGTTGCAGACTACAAATTCAGGGCATGCAAGGCTGAGCAAGATGTGTTGACACTCCAAGCCACCGTAGCTCGTTTAGAGAGTCAGGTTCTCCGCTACCGTAGTGCTGCTGAGCAAGCAGAACGGGTTGAGGATGAACTTAAGTGCGATCGCCGAAAGCTGCAGCGAgagGCCCGCGAAGCCCTGAGTCGAGTGGAAGAGCTGGAGACAGAGAATAGTCACTTAAATAAGCGTTTAGACAAACTGAAGAATGCCAAGTCAGCGCTGCTCAAGGAACTTTGA
- Protein Sequence
- MKMGDKSAKILKSSERDYGAQDGSEDEQFTDGDFEDSEDDTICTSTDNAKGVPCNEAINVKVDVDFVTSEVQRKGNEKRKISGSSQGANDTWNGNANCNWNEDLSIVGILGKDHDRAEARLAARRQARAEAREIRMKELERQQKEQEENADRIYDMYTDTPRATRGALRSGSSAPSSGNFLSSRRSSEDSLEEMGSIRDIRHELKEVEEKFRKAMILNAQLDNDKASFSYQLELLKDKLEDLQEQYTQLQREHKDKCRAYDSLSRECRATREELERCAAAVQLRDRCIREAGLELLAVEGGGDGGTGAALVSSASKQALEAAGQGTLDVRLQTLCSERQALENEVRQLKSQLEEERSKKKSNIHNSHNGPVNGSDSDSDFDTQRENSKLVADYKFRACKAEQDVLTLQATVARLESQVLRYRSAAEQAERVEDELKCDRRKLQREAREALSRVEELETENSHLNKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01012303;
- 90% Identity
- -
- 80% Identity
- -