Ople002428.1
Basic Information
- Insect
- Ochropleura plecta
- Gene Symbol
- -
- Assembly
- GCA_905475445.1
- Location
- FR997722.1:6235793-6236386[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-07 0.0001 23.2 0.0 2 40 16 55 15 60 0.90
Sequence Information
- Coding Sequence
- ATGCCACGAACATATGTGAGAAAGTCAAATAGGCTGCAGTGGTCGGAGTCAGACATGCTTTTAGCCATAAATTCAGTGCTGGAAGGCAGAATGGGATATCTTTTAGCGTCACACACATATTGTGTACCCAAAAGTTCCTTAGAAGATCGTGTAAAGAAGATCAAAGCTGGAAAATCCAAAGACGAAGTGTTTCGGAAGTGCCTTGCTACTGCAAAATGCGTCTTTACCGATGAGCTGGAAGGTATGCTAGTTGAACATATCAAAACTATGGAATCTCGACTATTTGGATTGACTAAAACAGATCTGCGACTTTTGGCATTCCAATTGGCTAAAAGAAATAATTTGAAACATCCTTTTAATGTGGAAACTGGACTCGCTGGCTTAGATTGGGTTAGTGGATTTCTAAAACGACATTCTGAATTGTCACTAAGATCACCTGAAGCTACATCAGCTGCAAGAGCAATGGGCTTTAATAGAGCTGTAGTGTCATCGTTTTTTAATCTTTTAGATACACTTTATGCAAAGCACGCTTTTAATTCCACACGAATTTATAACATGGACGAGACTGGATtgacctctgtaccaaaaaaatag
- Protein Sequence
- MPRTYVRKSNRLQWSESDMLLAINSVLEGRMGYLLASHTYCVPKSSLEDRVKKIKAGKSKDEVFRKCLATAKCVFTDELEGMLVEHIKTMESRLFGLTKTDLRLLAFQLAKRNNLKHPFNVETGLAGLDWVSGFLKRHSELSLRSPEATSAARAMGFNRAVVSSFFNLLDTLYAKHAFNSTRIYNMDETGLTSVPKK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01026070;
- 90% Identity
- iTF_01531938; iTF_01155043; iTF_01093021; iTF_01531940; iTF_00635340; iTF_00634372; iTF_00635342; iTF_00301107; iTF_01026070; iTF_00771864; iTF_00771841; iTF_00771839; iTF_00771840; iTF_00040746;
- 80% Identity
- -