Mimp039170.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990358.1:24456244-24456735[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.3e-08 1.5e-05 26.4 0.0 2 38 16 53 15 59 0.89
Sequence Information
- Coding Sequence
- ATGCCACGAACATATGTGAGAAAGTCAAATAGGCTGCAGTGGTCGGAGTCAGACATGCTTTTAGCCATAAATTCAGTGCTGGAAGGCAGAATGGGATATCTTTTAGCGTCACACACATATAGTGTACCCAAAAGTTCCTTGGAAGATCGTATCAAGAAGATCAAAGCTGGAAAATCCAAAGACGAAGTGTTTCGGAAGTGCCCTGCTACTGCAAAATGCGTCTTCACCGATGAGCTGGAAGGTATGCTAGTTGAACATATCAAAACTATGGAATCTCGACTATTTGGATTAACTAAAACAGATCTGCGACTTTTGGCATTCCAATTGGctaaaagaaataatttgaAACATCCTTTTAATGTGGAAACTGGACTCGCTGGCTTAGATTGGGTTAGTGGATTTCTAAAACGACATTCTGAATTGTCACTAAGATCACCTGAAGCTACATCAGCTGCAAGAGCAATGGGCTTTAATAGAGCTGTAGTGTCAtag
- Protein Sequence
- MPRTYVRKSNRLQWSESDMLLAINSVLEGRMGYLLASHTYSVPKSSLEDRIKKIKAGKSKDEVFRKCPATAKCVFTDELEGMLVEHIKTMESRLFGLTKTDLRLLAFQLAKRNNLKHPFNVETGLAGLDWVSGFLKRHSELSLRSPEATSAARAMGFNRAVVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00635340; iTF_00301107; iTF_01531938; iTF_01155043; iTF_00634372; iTF_01531940; iTF_00635342; iTF_01085138; iTF_00237495; iTF_01158780; iTF_01093021;
- 90% Identity
- iTF_01085138;
- 80% Identity
- -