Oleu004449.1
Basic Information
- Insect
- Ochropleura leucogaster
- Gene Symbol
- PAXBP1
- Assembly
- GCA_958449745.1
- Location
- OY288203.1:16660111-16670886[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.56 8.4e+03 -3.2 0.0 215 238 309 332 302 339 0.76 2 2 1.8e-10 2.6e-06 27.9 0.0 3 50 514 561 512 595 0.80
Sequence Information
- Coding Sequence
- ATGTCATTGTTTCGAAAGCCAAAGAAGATTCAGCGTCGGGTATTTTGTGCTGATGATGACGAGGATGGAGAGCCTGAGGCGCCTCCGCCGCCAGTCATCAGCCAAGAACGGGAGAAGAAGAAACCTGCTCTGTTGAGTTTCGCTGACGAAGAAGAAGAAGTGGAGGTCTTCAAAGTCAAGAAGTCCTCTCAAAGTAAGAGATTAGCAAAGAAGCGTGAGAAAGAGAAGCAGAAACGTGATGTGAGAACCGATGGTGATAATAACAAATATGACACTATCGTAATTGAGGACAACGACACAGACATCGTGAACGACAAACCAAAACCAAAGAAGAAGGTGTCACTAGAGGGGCTGATCCTGTCCGGTCGGGAGGCGCTAGCGGCCGACGGGGCGGGTGACGTGTCCGACGAGAGTGGGCCCGAAGAGGAGGACACAGAGGGGGACGACAGGGGGTTCCACCGGTACCGCGCCGAGTCCGTGAGGGCCGCGCTGTTGGGCGCACCCGGTCGCATTCCCGACGCAGCGCTCATTCACGCCGCACGCAAGACCAGACAGCAGGCTCGTGAATTGGGCGGCGGTGGCGCCGGCGCAGATTATATTCCCGTGAAGTCTGAGTCCGCCCCGGGATCCCGGTTAATTCGAGATGATGGGTCTGGAGATGATGAGGAGGAAGGGCGGATCCATGTCCGGGGACTGGACTTGCCTAGTGATAAGCCTAAACgtGGCACAGCAGCAGTGTCCGAGGAAGAGTTGGACAGCGAATCGGAAGATTGGGTGGAACAGCAGCTGCAGAAGGCGCGGCCCGTCCTCGCGGATCTGACTGGTGAAGCGCCAATAGAAGTGAATCCTTTCTCGGTGGCGTTGCCGCCGCCTCAGATGTCGGCACCCGAACACTTGCGACCTCTCACTACCGGCACACAGCCTCCTGCGACTGCCAACGAGCTGGTGGAAGCGTTGAAGAAACGGTTAGGAGAACTCCAAGTAGAACGCAAAGAAACTTCAGAGACGCAGAAGGAACTTCGCGAGAGGTTGCTCACTTCGGCAAGAATACGAGAGAGTCGGGCGTCGCGCTGTGGGGAGTTAGACGCGGCGTATAGGAGGGCGCAGGCCATACGAGGCTACCTTACAGACCTTATTGAGTGCCTTGATGAGAAGATGCCACAACTAGAGGCGTTGGAAGCTCGTGCGTTGGCGTTACATAAACGGCGCTGTGAGTTCCTCATCGAGAGACGAAGAGCCGACCTGCGGGATCAGGCACAAGATGTACTTGCTCCACCCGGGCGGGCCACAAAACCAGCCGACAACGAGGAGAAGACGCGTCGTGCGGCCGAACGCGAGGGCCGACGTCGCGCCCGACGACTCAAGCGCGAGGCCgcggccgccgccgccgggACCGCGCTGCCGCATCGGGACGGAGACTCCTCGGATGATGAGCTGCCTCCGCATGAGATGCACCATTATACACAGGAAAGAGACGCCATCCGTCAGCAATCAGCGTCGTTGTTCAGCGACGCGCTGCCCGCGTGGCGCAGCGTGTCGGGCGTGTGCTCGCGGCTAGCGCGCTGGCGGGCGCGCGCCGCCGACCTGTACACGGACGCCTACGTCGCCGACTGCCTGCCCAAGCTACTGGCGCCCTATGTGCGACATGAGCTAATACTATGGAACCCGCTGGCAGATGAAGACAACGAAGATTACGAGAGAATGGATTGGTACAAATGTCTGATGATGTACGGCGTCCGTACGGAGCGTGGAGCAGACTCATCGTCTTCGGCGTCGGAAGGCGAGGTGGAGCCGCTGCCGGTCACGGAAAGCACCGTGCGAGAGGACCCTGACCTGCTGCTAGTGCCCAGCATCATCAGCAGGGTGGTGCTGCCTTGTCTCACAGGTATACCTTAA
- Protein Sequence
- MSLFRKPKKIQRRVFCADDDEDGEPEAPPPPVISQEREKKKPALLSFADEEEEVEVFKVKKSSQSKRLAKKREKEKQKRDVRTDGDNNKYDTIVIEDNDTDIVNDKPKPKKKVSLEGLILSGREALAADGAGDVSDESGPEEEDTEGDDRGFHRYRAESVRAALLGAPGRIPDAALIHAARKTRQQARELGGGGAGADYIPVKSESAPGSRLIRDDGSGDDEEEGRIHVRGLDLPSDKPKRGTAAVSEEELDSESEDWVEQQLQKARPVLADLTGEAPIEVNPFSVALPPPQMSAPEHLRPLTTGTQPPATANELVEALKKRLGELQVERKETSETQKELRERLLTSARIRESRASRCGELDAAYRRAQAIRGYLTDLIECLDEKMPQLEALEARALALHKRRCEFLIERRRADLRDQAQDVLAPPGRATKPADNEEKTRRAAEREGRRRARRLKREAAAAAAGTALPHRDGDSSDDELPPHEMHHYTQERDAIRQQSASLFSDALPAWRSVSGVCSRLARWRARAADLYTDAYVADCLPKLLAPYVRHELILWNPLADEDNEDYERMDWYKCLMMYGVRTERGADSSSSASEGEVEPLPVTESTVREDPDLLLVPSIISRVVLPCLTGIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00851821;
- 90% Identity
- iTF_00123397;
- 80% Identity
- -