Odup015037.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- ZIPIC
- Assembly
- GCA_951361185.1
- Location
- OX592705.1:11541661-11543022[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0027 0.2 12.8 0.3 2 23 130 151 129 151 0.97 2 11 5.9e-05 0.0043 18.0 0.1 1 23 157 180 157 180 0.97 3 11 0.00021 0.015 16.3 0.2 1 23 190 212 190 212 0.98 4 11 5.8e-06 0.00042 21.2 0.4 1 23 218 240 218 240 0.99 5 11 1.7e-06 0.00012 22.9 0.3 1 23 246 268 246 268 0.97 6 11 5.2e-05 0.0038 18.2 2.3 1 23 274 296 274 296 0.98 7 11 1e-05 0.00075 20.4 0.8 1 23 302 325 302 325 0.95 8 11 0.019 1.4 10.1 0.6 2 23 331 349 331 349 0.95 9 11 0.00043 0.031 15.3 2.7 1 23 355 378 355 378 0.90 10 11 0.0065 0.48 11.6 0.5 1 23 384 409 384 409 0.95 11 11 1.4e-05 0.001 20.0 4.6 1 23 415 438 415 438 0.97
Sequence Information
- Coding Sequence
- ATGAACCCGGCAATATGCCGTGTTTGTCTAAATAAAACCGCGTCAATATCCTTATTTGATAAAAACGGCGATGAAGAACAACTAAGCATCAAAATTATGCAAGTTGTTAACGTGCACATCGCGGAAGGAGACGGTTTTCCCGGGGCTATTTGTGAGCAGTGCGCCGGGGAGCTCGCGGTGTCCTATCAATTCGTGAACAAGTGCCAAGAGTCTGACAAAGCCCTCAGAGACATCAGCTTCGAAGACTGTAAAATTGAAATAGATGTAAAGAACGAAGAGGTAGATTTCTTGGATGACTTCTTGTCACAAAACAGTCCTGAAGTTCCTATtgtgaaaaaatatacaaagagaaAGAAAAGTGCGAAGAATAGAAAAAAAGGTCCTATCCAATGTGTGATATGTGGTACTGTGTTAAAATGTCAATCAGCTCTTGACAACCACATGAGAGTTCATACTGGTGAAAAACCGTTCCCCTGCCCCATGTGTGATGCCCGGTTCCCGTATAAAGCTTCAGTATCTCGTCACATGGAAACTAACCATAAGGCAAGAGAAGCTAGACAACGGAACTATGTGTGTGAGACATGTGGGAGTAGTTTCTTTACGAAAAATGATATCATTGTACATCTACGGGTTCATACTGATGAGAGGCCATATACTTGCCCATATTGCCCTAAAAGGTTCCGTCAAGTTGGCTCACAGATCCGGCATGTACGCATACACACAGGTGAACGTCCATTTCCTTGTCCAACTTGTAACAAGAGCTTTGCTGATAAAAATGTTCTACAAAGACATCAAAGTGTACATAGTGATGAAAAGAATTTTACGTGCCATCTCTGCAGTAAAGGAGTGAAGACCAGAAATGCTCTTACTACCCATATGAAGATACATTCCAATGAAAAGAGACATATTTGTAGTTATTGTGGTATGGGTTTTACCATGAAAGGTAACCTACAAACGCATATTAGTAGAATTCACTCGGAGAGATCGGGGCAGTGTATGGTATGTCAAAAGACATTCCCAGACCTCGAAGCACACATGCGTAAACATACTGGTGAAAGACCGTTTGCTTGTAAGCTGTGCGAAAAGAGTTTTGGTTCAAAAAGAAGCTTGTCACACCACATGGTATTCAGACATGAAAATGCATCAAAATTCAAATGCTCTATCGGTGAATGTACTAAAACATTCCCTACAGCTACAATGTTAGAGTTTCATTTACTGAAGCAGCATACAAACCATACTCCATACATTTGTCACCACTGCTCGCGTGGTTTCTTCCGTAGTAGTGACCTCTCACGACATTTGAGAGTCAATCATTTGGATACTCCATTGAAAATACCTATGAAATCTCATGTGCCCAACTAA
- Protein Sequence
- MNPAICRVCLNKTASISLFDKNGDEEQLSIKIMQVVNVHIAEGDGFPGAICEQCAGELAVSYQFVNKCQESDKALRDISFEDCKIEIDVKNEEVDFLDDFLSQNSPEVPIVKKYTKRKKSAKNRKKGPIQCVICGTVLKCQSALDNHMRVHTGEKPFPCPMCDARFPYKASVSRHMETNHKAREARQRNYVCETCGSSFFTKNDIIVHLRVHTDERPYTCPYCPKRFRQVGSQIRHVRIHTGERPFPCPTCNKSFADKNVLQRHQSVHSDEKNFTCHLCSKGVKTRNALTTHMKIHSNEKRHICSYCGMGFTMKGNLQTHISRIHSERSGQCMVCQKTFPDLEAHMRKHTGERPFACKLCEKSFGSKRSLSHHMVFRHENASKFKCSIGECTKTFPTATMLEFHLLKQHTNHTPYICHHCSRGFFRSSDLSRHLRVNHLDTPLKIPMKSHVPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437301;
- 90% Identity
- iTF_01252044; iTF_01416098; iTF_01417053;
- 80% Identity
- -