Tocu014293.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tethea ocularis
Gene Symbol
ZIPIC
Assembly
GCA_963555595.1
Location
OY741972.1:10628308-10629672[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0029 0.18 12.8 0.3 2 23 131 152 130 152 0.97
2 11 0.00022 0.014 16.3 0.0 1 23 158 181 158 181 0.96
3 11 0.00022 0.014 16.3 0.2 1 23 191 213 191 213 0.98
4 11 6.6e-06 0.00043 21.1 0.4 1 23 219 241 219 241 0.99
5 11 1.7e-06 0.00011 22.9 0.3 1 23 247 269 247 269 0.97
6 11 5.5e-05 0.0035 18.2 2.3 1 23 275 297 275 297 0.98
7 11 2.4e-05 0.0015 19.3 0.5 1 23 303 326 303 326 0.94
8 11 0.0038 0.24 12.4 0.3 2 23 332 350 331 350 0.96
9 11 0.00019 0.012 16.5 2.8 3 23 358 379 356 379 0.91
10 11 0.0069 0.44 11.6 0.5 1 23 385 410 385 410 0.95
11 11 1.4e-05 0.00093 20.0 4.6 1 23 416 439 416 439 0.97

Sequence Information

Coding Sequence
ATGGAGCCGGCTATATGCCGTGTTTGTTTGACTAAAAGCGCGTCGATATCCTTATTCGATAGACAGGACGATGAGGAACAAATAAGCACCAAGATTATGAGGGTTGTCAACGTGCACATCGTGGAGGGAGACGGTTTGCCCGGGGCTATCTGCGAGGATTGTGCCGGGGAGCTCGCGGTCTCCTACCAATTCGTGAACAAGTGTCAAGCATCAGACAAAGCCCTCAAAGACATCAACTTAGACGATTGCAAAATCGAAATCGATGTAAAGAACGAAGAGGTAGATTTCTACAATGATTTCTTATCACAAAACAGTCCTGAAGTTCCTATCgtgaaaaaatatagtaaaagaaaaaaaagtggaAAGAAGAGTAAAAAGTCAGGCCCTATCCAGTGTGTCATTTGTGGTACAGTATTAAAATGTCAATCGGCACTGGATAACCACATGCGAGTCCACACCGGTGAGAAACCATTCGCCTGCCCAATGTGTGATGTACGGTTTCCATACAAAGCTTCTGTGGCTCGTCACATAGAAACCAACCATAAAGCAAGAGAAGCTAGAGAACGAAATTATGTCTGCGAAACTTGCGGCAGTAGTTTCTTTACCAAGAATGATATTATTGTACATCTACGAGTTCATACTGATGAGAGGCCGTATACTTGCCCATATTGTCCTAAACGGTTCCGTCAAATCGGTTCACAGATACGGCATGTACGAATACACACTGGTGAACGACCATTCCCATGTCCGACATGTAACAAGAGTTTTGCCGATAAGAATGTGCTGCAGAGACACCAGAGTGTACATAGTGATGAAAAGAATTTTACGTGTCATCTCTGCAGTAAAGGAGTTAAGACCAGAAATGCTCTTACTACCCATATGAAGATACATTCCAATGAAAAGAGACATATTTGCAGTTATTGCGGTATGGGATTTACCATGAAAGGAAACCTGCAGACCCATATTGGAAGAATTCACTCTGAAAAGTCAGGGCAGTGTTCAGTGTGTCAAAAAACATTCCCGGACCTTGAGGCACATATGCGAAAACATACCGGTGAAAGACCGTTTGGTTGCAAGCTGTGTGACAAAAGTTTTGTATCTAAAAGAAGCTTGTCGCATCACATGGTCTTCAGACATGAAAATGcatcaaaattcaaatgttCTATCGGTGAATGTACAAAAACATTCCCTACTGCTACAATGTTAGAGTTCCATTTACTGAAGCAGCATACAAATCACACTCCTTACATTTGCCACCACTGCTCTAGAGGTTTCTTCCGTAGTAGTGACCTCTCGCGGCATTTGAGAGTCAATCATTTGGATACACCATTGAAAGTACCTATGAAATCTCATGTGTCTAACTAA
Protein Sequence
MEPAICRVCLTKSASISLFDRQDDEEQISTKIMRVVNVHIVEGDGLPGAICEDCAGELAVSYQFVNKCQASDKALKDINLDDCKIEIDVKNEEVDFYNDFLSQNSPEVPIVKKYSKRKKSGKKSKKSGPIQCVICGTVLKCQSALDNHMRVHTGEKPFACPMCDVRFPYKASVARHIETNHKAREARERNYVCETCGSSFFTKNDIIVHLRVHTDERPYTCPYCPKRFRQIGSQIRHVRIHTGERPFPCPTCNKSFADKNVLQRHQSVHSDEKNFTCHLCSKGVKTRNALTTHMKIHSNEKRHICSYCGMGFTMKGNLQTHIGRIHSEKSGQCSVCQKTFPDLEAHMRKHTGERPFGCKLCDKSFVSKRSLSHHMVFRHENASKFKCSIGECTKTFPTATMLEFHLLKQHTNHTPYICHHCSRGFFRSSDLSRHLRVNHLDTPLKVPMKSHVSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437301;
90% Identity
iTF_01083567;
80% Identity
-