Tflu018065.1
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- ZIPIC
- Assembly
- GCA_951216915.1
- Location
- OX578230.1:11166307-11167671[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.024 1.9 9.8 0.6 2 23 131 152 130 152 0.97 2 11 2.2e-05 0.0017 19.4 0.1 1 23 158 181 158 181 0.97 3 11 0.00021 0.016 16.3 0.2 1 23 191 213 191 213 0.98 4 11 5.9e-06 0.00046 21.2 0.4 1 23 219 241 219 241 0.99 5 11 6.2e-07 4.8e-05 24.3 0.2 1 23 247 269 247 269 0.98 6 11 5.4e-05 0.0041 18.2 2.3 1 23 275 297 275 297 0.98 7 11 2.3e-05 0.0018 19.3 0.5 1 23 303 326 303 326 0.94 8 11 0.091 7 8.0 0.5 2 23 332 350 332 350 0.94 9 11 0.00044 0.034 15.3 2.7 1 23 356 379 356 379 0.90 10 11 0.0067 0.52 11.6 0.5 1 23 385 410 385 410 0.95 11 11 3.6e-05 0.0028 18.7 4.8 1 23 416 439 416 439 0.97
Sequence Information
- Coding Sequence
- ATGGAGCCGGCAATATGCCGTGTTTGTCTAAATAAAACCGCATCGATATCCTTATTCGACAGAAACGGCGATAATGAACAAATATACACCAAAATTATGCAGGTTGTTAACGTGCTCATCGTAGAAGGAGATGGTTTGCCGGGGGCAATCTGTGAGCAATGCGCCGGGGAGCTCACGGTGTCTCACCATTTCGTGAACAAGTGCCAAGCATCAGACAAGACCCTTAGGGACATCAACTTagacgattttaaaatcgaaatTGATGTTAAGAACGAAGAGGTGGATTTCTATGATGATTTGTTATCACAGCACAGTCCCGAACTTcctattgttaaaaaatataccaagaGAAAGAAAAGGGCGAAGAAGAGTAGAAAAAAAGGTCCTATCCAATGTGTCATATGTAGTACAGTGTTGAAATGTCAATCAGCTCTGGATAACCACATGAGAGTACATACTGGTGAGAAACCATTCCCCTGCCCAATGTGTGATGCCAGGTTCCCGTATAAAGCTTCAGTGACTCGTCACATGGAAACTAACCATAAATCAAGAGAAGCTAGAAAACGAAACTATGTCTGTGAGACATGTGGCAGTAGTTTCTTTACCAAGAACGATATCATTGTACATCTACGTGTGCATACTGATGAGAGGCCATATACTTGCCCATATTGCCCTAAAAGGTTCCGTCAGGTCGGTTCACAGATACGGCATGTCCGTATACACACTGGTGAACGACCATTCCCATGTCCAATATGTAACAAGAGCTTTGCTGATAAAAATGTTCTACAGCGTCACCAAAGTGTACATAGTGACGAAAAGAATTTTACATGCCATCTCTGCAGTAAAGGAGTTAAGACGAGAAATGCTCTAACCACCCATATGAAAATACATTCCAATGAAAAGAGACATATTTGCAGTTATTGTGGCATGGGCTTTACTATGAAAGGAAACCTGCAGACCCATATCGGTAGAATACACTCTGAAAGGTCAGGGCAGTGTACAGCATGTCAAAAAATGTTCCCAGACCTAGAGGCACATATGCGAAAACATACCGGTGAAAGACCGTTTGCTTGTAAGCTGTGTGAAAAGAGTTTTGGGTCCAAAAGAAGCCTATCACATCACATGGTGTTCAGACAtgaaaatgcatcaaaattcaaATGCTCTATAGGTGAATGTACTAAAACATTCCCTACTGCTACAATGCTAGAGTTCCATTTGCTGAAGCAGCATACAAATCACACTCCATACATTTGCCACCACTGCTCGCGAGGTTTCTTCCGTAGCAGTGACCTCTCAAGACATTTGAAGATTAATCACATGGACATTCCATTGAAATTACCTATGAAATCTCATACATCTAACTGA
- Protein Sequence
- MEPAICRVCLNKTASISLFDRNGDNEQIYTKIMQVVNVLIVEGDGLPGAICEQCAGELTVSHHFVNKCQASDKTLRDINLDDFKIEIDVKNEEVDFYDDLLSQHSPELPIVKKYTKRKKRAKKSRKKGPIQCVICSTVLKCQSALDNHMRVHTGEKPFPCPMCDARFPYKASVTRHMETNHKSREARKRNYVCETCGSSFFTKNDIIVHLRVHTDERPYTCPYCPKRFRQVGSQIRHVRIHTGERPFPCPICNKSFADKNVLQRHQSVHSDEKNFTCHLCSKGVKTRNALTTHMKIHSNEKRHICSYCGMGFTMKGNLQTHIGRIHSERSGQCTACQKMFPDLEAHMRKHTGERPFACKLCEKSFGSKRSLSHHMVFRHENASKFKCSIGECTKTFPTATMLEFHLLKQHTNHTPYICHHCSRGFFRSSDLSRHLKINHMDIPLKLPMKSHTSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437301;
- 90% Identity
- iTF_01083567;
- 80% Identity
- -