Osyl018372.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- retn
- Assembly
- GCA_905404295.1
- Location
- FR990142.1:3039204-3048086[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-17 1.4e-13 51.5 0.1 29 89 4 62 1 62 0.93 2 2 1.4 4.5e+03 -1.4 0.0 10 38 159 197 148 200 0.52
Sequence Information
- Coding Sequence
- ATGGCCAAGTCTGTGCTGGACCTTTACGAGCTGTACAACTTGGTGATCGCGCGCGGAGGCCTCGTCGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGTCTCCGGCTGCCCTCGTCCATCACCTCCGCAGCCTTCACTCTACGTACTCAATACATGAAGTACCTGTACGACTACGAGTGCGAGAAGAAGAACCTGTCCACCCGCAGCGAGTTGGACGCGGCTATAGAGGGCAACAAGCGCGAGGGCCGCCGCGCTTCGGGACAGTACGACGCGCAAGCCGCTCTGGCTATGCCACCTCTAAACCGTGTGCCAGCGTCCCTCGCGCAGTTGTCCCAGCACATGCAACCGCTGTCCCTGTCCCTGGGCGGCGTCCCGCGGCTCCCCCCGCTGCCACCGCACGCGCCGCACGTCACGCACGACATAGAGTACCGCGTCCGGGAGTACATGAAGATGATCCAACAGCAACGCGAGCTGATGAGGAATGGATCAGAATCCCCTCCCAGCGCTCCGATGGTATCACCCCGGGACGCTGCACTCTCCGCAATTGACGTGTCGCGCTTGACTCTCTGGTCGCTCTACAACAACAACAACAACAGCCCACAACCGGACCTCGAGCCGCAACGGGAAGCACTGAACCTAAGCGAGAGCCCCAACTCAAGCACGAGCGGCAAACGCGAGGCCTGCCGGTCTCCCCCTCCCCCCGCCAAGCGCCGCACACCGCGCCCGCCCTCCCCGCGCGCGCCCTCCCCGCGCTCGCCCCGCGCGCCGCACGCGCCGCACGCGCCGCACGGGCCGCTCGCGCCGCGCGACGCGTCGCACGCCGCGCACGTCAACGGCAATGCGAATGGCGTCAACGGTGCGGCATTCAAGATCACTACCAGAGGGGACCAGCAACTGGTGGTATCGATCGAGCTCAACGGCGTTACGTACGAGGGCGTGCTGTTCCCGTCCCAGAGCGGGAACGGCCAGAACGGGCACAGGCAAATGGTTTCCTAA
- Protein Sequence
- MAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVPRLPPLPPHAPHVTHDIEYRVREYMKMIQQQRELMRNGSESPPSAPMVSPRDAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSSTSGKREACRSPPPPAKRRTPRPPSPRAPSPRSPRAPHAPHAPHGPLAPRDASHAAHVNGNANGVNGAAFKITTRGDQQLVVSIELNGVTYEGVLFPSQSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723754;
- 90% Identity
- iTF_00795483;
- 80% Identity
- -