Basic Information

Insect: Nymphula nitidulata
Gene Symbol: -
Assembly: GCA_947347705.1
Location: OX374618.1:19638048-19643712[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.13 14 7.2 3.8 2 22 195 215 194 215 0.96

2 16 2.6 2.8e+02 3.2 1.0 1 23 315 337 315 337 0.82

3 16 0.45 49 5.5 0.5 2 23 467 488 466 488 0.96

4 16 0.16 17 6.9 0.4 3 23 566 586 564 586 0.96

5 16 0.025 2.7 9.5 1.8 1 23 594 616 594 616 0.98

6 16 0.091 10 7.7 3.4 1 23 650 672 650 672 0.95

7 16 0.00018 0.02 16.2 4.0 1 23 680 702 680 702 0.99

8 16 0.54 59 5.3 1.9 1 23 781 803 781 803 0.97

9 16 0.044 4.8 8.7 0.6 1 19 859 877 859 881 0.93

10 16 6.1 6.7e+02 2.0 0.6 1 19 887 905 887 909 0.93

11 16 0.0032 0.35 12.3 0.4 1 23 978 1000 978 1000 0.93

12 16 0.011 1.2 10.6 1.1 1 23 1006 1028 1006 1028 0.96

13 16 0.005 0.55 11.7 2.6 1 23 1117 1139 1117 1139 0.97

14 16 0.00012 0.014 16.7 1.4 1 23 1145 1167 1145 1167 0.99

15 16 0.22 24 6.5 1.6 1 23 1257 1279 1257 1279 0.95

16 16 0.00061 0.067 14.6 3.9 1 23 1290 1312 1290 1312 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.13	14	7.2	3.8	2	22	195	215	194	215	0.96
2	16	2.6	2.8e+02	3.2	1.0	1	23	315	337	315	337	0.82
3	16	0.45	49	5.5	0.5	2	23	467	488	466	488	0.96
4	16	0.16	17	6.9	0.4	3	23	566	586	564	586	0.96
5	16	0.025	2.7	9.5	1.8	1	23	594	616	594	616	0.98
6	16	0.091	10	7.7	3.4	1	23	650	672	650	672	0.95
7	16	0.00018	0.02	16.2	4.0	1	23	680	702	680	702	0.99
8	16	0.54	59	5.3	1.9	1	23	781	803	781	803	0.97
9	16	0.044	4.8	8.7	0.6	1	19	859	877	859	881	0.93
10	16	6.1	6.7e+02	2.0	0.6	1	19	887	905	887	909	0.93
11	16	0.0032	0.35	12.3	0.4	1	23	978	1000	978	1000	0.93
12	16	0.011	1.2	10.6	1.1	1	23	1006	1028	1006	1028	0.96
13	16	0.005	0.55	11.7	2.6	1	23	1117	1139	1117	1139	0.97
14	16	0.00012	0.014	16.7	1.4	1	23	1145	1167	1145	1167	0.99
15	16	0.22	24	6.5	1.6	1	23	1257	1279	1257	1279	0.95
16	16	0.00061	0.067	14.6	3.9	1	23	1290	1312	1290	1312	0.98

Sequence Information

Coding Sequence: ATGGGTCTACAAAACGCTGAAAAAGACATAATTAGCTGCCACAGTGATTCAAACGATGCCACAGACACGAGTGGCAAAAAGGACGCAGTGGAGTTCGCACTAGATGGACAAAATCAACAGTCACCCAACTCCACCTCAGATGATGCAAAATCTCAGAAACAAAACAGGAAACCTCCTAGGCCATTACCACCGCTCATACCACTGCATGCGTCAACACCTAATCAAAACAAAATATCAACCGGAGAGCCACCATCGAAAAAATTCAAGGAAACTCCTAGTTCTGACGTGACAGATTCTAGTAAAGGTAACAAATTTGAAAATTTGCCTGTTGATATTAGTCTAATACCTGTGCATAACAATCCCAATAATAGTAAGGAATCAGCACGTAAGAAAAATGAATCATTTTTTGACAAACTTAAAGAAAGACTTTTAACAGAGACTGGTGAAGAAGGATCTCTAAAATGTAAAAATTGTGGTTTCGAAAGTAAATGCTTGTCAGAACATTCCGTACATGAAAAAAATTGTACCTCACATTTGAACCGCATGTCAACAAACACTTTACTGCCTAGTCTAAGCTCAACGCGTTGCCAAAATTGTAGGCACAGGTGCAAATCCAGTGCAGATCTATATGTTCACATGAAAACATGCAAGAAAAGTGAGCAAGTCAAAGATGACGTAACTATGGAAGTTAAAAGTCAAGACAGCAATGAAGGTGTAACATCTACTCAAGAAAGAGACATAGAACCACATCCGATGGAAAATGTTGTCTTCGTATGGAATAATATAAGTCATAACCCAAATAAATATGATACTCCGTTGGATATAAATATTAACGATGATTCGACTCTTCCTGAAATAAATAGAAGTTATGATCCAGATGTTATACACGATGACAATGAAGGAATGAACTTGTCTCCAAGTCAAGCCATGGGAAAGAAAGTTTTTAAATGTCCTCATTGTCCTTTCTGGGCTTCTACTGCGTCAAGATTTCACGTGCATATTGTAGGACATTTGAATAAGAAACCATTTGAATGTTCCCTTTGTAAATATAAATCTAATTGGCGTTGGGATATCACAAAACACATAAAACTAAAGTCGGCTAGGGACCCTGATCATAATGACGCGAAAGTTCTTATGACAGACGAGACTGGCAGAAGAAATTATAGTAAATATAATAAATTCTTAGCGATGTCTATACCAAATGAAAATGGTGAAAATGTATTCCACTATTTAGATTTAAACGCATCAGGTGATGCCTCGATGGAAATGGATGAATCGTACAATGATATGAATGACACTATAAATAGTAATCATCCACTTGATATGCAACCATTGAATTTACAAACATATAATAATGATCAAAAATATGACTCCAAGAAGCCTAAGAGAACTTTATGGAAATGTAAAAGATGCAATTACAGAGATTCGTCCAAAGAAGCATTATTGGAGCACGTACGTGAACATTCCCGGGCTGATGGCAATCAAGATGATATGAAATCACTTAAAAAACCAGAGAATCCTCCAGACCCAGCAGATTTGGCGTATCGCTGTGGCCACTGCAATCAACTTTCAAATTGGAAGCATGTTATACAGAGACATTGCCGTTTAAAACACGATGGCGTTATAAAAGTCATAACAACAGTGAAGCCGAAACCAGATGCAGCAATATCATTAAACGATATTAGCGGTGATGCCTGCAATAAATGTCCGTTTAAGACCAACGACAAAAAAATGATGTTAGCACATCTTCAAGGACACCAACCTTCGCCACAGTCCATATTTAAATGCTTCTTCTGTCCATACTTTGTTAAAGATGAACATGAGCTAATACAGCATTTAACTATACATGGAGTCTCTGAACCAGAAGAATATATTGCTAAAGCGATGGGTCGAAAATCTCCATTAGCTGAATCCAGTACACCCAATACATCTTATGGTAATAAACGACATAAATGTACCGAATGCCCATACGAAACAAACAGTAAGTCACAATACATGTATCATGAACAATTCCATCGACTACCTGCAGATACACCCTATAAGTGCCCGGAGTGCAATTACAGTGTGTCCAAAAGACATCTACTACATCAGCATTTACGAGTTCACGGAATATTAACAAAAAAAAATGAATCAGAAGCAGAACTAGAAGCAAAGTCAGATACCAAGATAGAATTCTCCATTAATCTTGATGAAATTCCATTTGTCTGGGTTTCAGCTAAAAATGAATTTCATAAAATGTATAAATGTCGTTATTGTTCTTACGTTAATTCTCAAAAATGTAAAATTCCAAACCACGAAAAAATTCACTTCATCGTATTCGAAAATACAGATATTACCGTTTACAAATGCTTGGAATGTAAATTTACATGCGATAATGCTATACGCTTAGCTGAACATTCAAAAAGCCATGGTGAAATATACGGACGCATTTACTGTCCTGTGGAATGTGATATTCCAGATGAAGAACAAATAGAAAAATTACGTAAAGTTATTGAATCCGAAAAAAATAACGTTTCTGAAGGTATGTTGAAAGAAGATAAATCTGTAAATGAAAATAATGAAACAAAAATACTCTACTTTTGCCAAATGTGTCCAGCTAGATTTTTCACTCCTGAAGAACTTAAGATCCACGATAAATTTCACGACTTATCATTCCCACATAAATGTAAAAGTTGTGAATTCTCTGTTCCCGAAGAAAGCGATTTAAGTTCTCATGATGATGTTCATATGGATGAATATCACACAAAAACTAAAATCTTAAAGTTCATACATAACACACATGGTGCACATAAACAACCCAACCTTGAACTTGTGCACTGCCCTGCTACCTCGGAAATTACGTGGGTAGCTTTAACCCCGCGTAAAAATTATGAACCTGCTGAAAGTAACACAAATAAAAGATCAAATGATACAAAACATGTGCCTAAACAATATCTATGCAAAGAGTGTCCTGCAAAGTTTTTCAAAAGTTCTGCCCTTAACTATCATATGGGACTCCATGGTGGAGAAGGTGACCATAAGTGCAAAAAGTGCAGTTACGCTGTAAAGAACATAGGAAATTTGGCAAAACATGAACTGTTACATGAAAATGAAGGAAAATCAACTTGTGATTACGAATCCGGAGAAGATATGGATTATAAAAATATTCCACTATCGGGAACAGACCTATTTCAAAGAAAGACTGAAGCCCAAAAGAGAGTACTTAACGACAAAGACAAGTTAGTGAAACCAAACGACCATTTTCCACCTGTACTTCAAGCTGATCCTCAATTTGGTTATTTAATGCATGGAAATCCCGAATTTATCTACCCAACATATTTAAAAAATGGCCGTCAAAAGGAAAAGCGATATAAATGCCACAAATGTCCTTCAGCCTTTGAAAAAAGAGAACAATATAAAATACATTTATCACTACATGGGTCCAAACAGAGATATAAATGTGAGCTGTGCGATTATTCAGTAAAGTATTACGCTAATTACGTCCAACACATGAGAAAACATCAAATGAATGACGAAGCACTGGCGGAAAGAAAGAAAATTAGTAGTGGTTTCGTTGAATCGGAACTTCAAGATAACAAGCATGAAGATAATGATAATATTAAGTTAGCTATAAAAACTATGCCCAAAGGTGTACCGAAAAGTGATTTCCAACAATTTTCAGTGCGCGACCAACAAACTCTGCGATTGTTGCAACGCAGGCGTTCCATAAATAGCAATAAAGAACAAACATCACCATCTGAAACATCTCCTGCGAAAGATCGCAAGTTACATATCTGTTTACTGTGTCCATACACAAATCAAAGGCAAGACGCTCTGAATAATCATTATAGGAGACACGACGATGCGGATATTCTTAATGTTGGCAGTCATAAATGTTCTTATTGTGACTTGGTTGTCGTTCAGTCACATTTCCTTCGTGAGCATATGAAAACTCATTTTACGTACCAAAAAAATCTGGCCCCTGAATGTTATGTTGCTAATGAGGAAGTAAGTTTCACTATAAGTAAAGTAGATGACGAAGAAGAATCTACCGATCTCAAGTTAGATATAGATATACAACTCGAAAGTAGTAAGTGCAATGAAAACAAAATATTTGTCAAACTCCAAACAGGAGAACTCATAGTTGAATAA
Protein Sequence: MGLQNAEKDIISCHSDSNDATDTSGKKDAVEFALDGQNQQSPNSTSDDAKSQKQNRKPPRPLPPLIPLHASTPNQNKISTGEPPSKKFKETPSSDVTDSSKGNKFENLPVDISLIPVHNNPNNSKESARKKNESFFDKLKERLLTETGEEGSLKCKNCGFESKCLSEHSVHEKNCTSHLNRMSTNTLLPSLSSTRCQNCRHRCKSSADLYVHMKTCKKSEQVKDDVTMEVKSQDSNEGVTSTQERDIEPHPMENVVFVWNNISHNPNKYDTPLDININDDSTLPEINRSYDPDVIHDDNEGMNLSPSQAMGKKVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPDHNDAKVLMTDETGRRNYSKYNKFLAMSIPNENGENVFHYLDLNASGDASMEMDESYNDMNDTINSNHPLDMQPLNLQTYNNDQKYDSKKPKRTLWKCKRCNYRDSSKEALLEHVREHSRADGNQDDMKSLKKPENPPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDAAISLNDISGDACNKCPFKTNDKKMMLAHLQGHQPSPQSIFKCFFCPYFVKDEHELIQHLTIHGVSEPEEYIAKAMGRKSPLAESSTPNTSYGNKRHKCTECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGILTKKNESEAELEAKSDTKIEFSINLDEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHFIVFENTDITVYKCLECKFTCDNAIRLAEHSKSHGEIYGRIYCPVECDIPDEEQIEKLRKVIESEKNNVSEGMLKEDKSVNENNETKILYFCQMCPARFFTPEELKIHDKFHDLSFPHKCKSCEFSVPEESDLSSHDDVHMDEYHTKTKILKFIHNTHGAHKQPNLELVHCPATSEITWVALTPRKNYEPAESNTNKRSNDTKHVPKQYLCKECPAKFFKSSALNYHMGLHGGEGDHKCKKCSYAVKNIGNLAKHELLHENEGKSTCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLNDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEALAERKKISSGFVESELQDNKHEDNDNIKLAIKTMPKGVPKSDFQQFSVRDQQTLRLLQRRRSINSNKEQTSPSETSPAKDRKLHICLLCPYTNQRQDALNNHYRRHDDADILNVGSHKCSYCDLVVVQSHFLREHMKTHFTYQKNLAPECYVANEEVSFTISKVDDEEESTDLKLDIDIQLESSKCNENKIFVKLQTGELIVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00279598;
90% Identity: iTF_00006713;
80% Identity: -