Clem005076.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008341.1:13353497-13358080[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.15 11 7.2 3.4 2 22 191 211 190 211 0.95 2 17 2.9 2.2e+02 3.2 1.0 1 23 308 330 308 330 0.82 3 17 5.7 4.4e+02 2.2 0.2 1 21 336 356 336 357 0.83 4 17 0.72 55 5.0 0.3 2 23 465 486 464 486 0.95 5 17 0.3 23 6.3 0.6 2 23 563 584 562 584 0.95 6 17 0.013 1 10.5 1.4 1 23 592 614 592 614 0.98 7 17 0.077 5.9 8.1 3.6 1 23 649 671 649 671 0.95 8 17 0.0002 0.015 16.2 4.0 1 23 679 701 679 701 0.99 9 17 0.3 23 6.2 0.8 1 23 780 802 780 802 0.98 10 17 1.2 93 4.3 0.2 1 23 857 879 857 879 0.94 11 17 0.26 20 6.4 0.1 2 23 886 907 886 907 0.97 12 17 2.2 1.7e+02 3.5 0.4 1 23 975 997 975 997 0.89 13 17 0.013 0.99 10.5 4.0 1 23 1003 1025 1003 1025 0.96 14 17 0.0056 0.43 11.7 2.6 1 23 1115 1137 1115 1137 0.97 15 17 0.00014 0.011 16.7 1.4 1 23 1143 1165 1143 1165 0.99 16 17 7 5.4e+02 1.9 1.6 5 23 1258 1276 1254 1276 0.84 17 17 0.0051 0.39 11.8 3.5 1 23 1287 1309 1287 1309 0.98
Sequence Information
- Coding Sequence
- ATGGGTCTGCAAATCGCTGAAAAAGACATTGTGAGCTGCTATAGCGACTCAAACGATGCCGTCGACACGAGTGCCAAAAAGGACGCGATGCAATTGGCACCAGATGGACAAAGTCAACAATCACCAAACTCCATGTCAGATGACGCAAAATCTCAGAAGCAAAACAGGAAGCCCGCTAGGCCATTGCCACCTCTTATACCATTACATTCCTCGACGCCGACTCAAAACAAAACATCGACTGGGGAGCCACCGTCGAAAAAATTCAAGGAGAATCCTATCCCAGAGACATCAGAGACCAACAAAGACTGCAAATTCGAAAATTTACCTGTCGATATCAGCCTCATACCGGTAAACAGCATGCCTATAGCTGCACGCAAGAAAAATGAGTCGTTTTTTGACAAACTTAAAGAGAGACTGCTAACCGAGACAGGTGAAGAAGGATCTTTAAAATGCAAAAATTGTGGCTTCGAAAGCAAGTGTTTGTCAGAGCATTCAGTTCATGAGAAAAATTGTGTGTCCAACCTGAATCGTATGTCTACAAGCACTCTGCTCCCAAGTTTAAGTTCTACGCGCTGCCAAAATTGTAGGCACCGATGCAAGTCTAGTGCTGATCTTTACGTACACATGCAAACGTGCAAGAAGGAGAGAGTGAAAGGTGACATAACAACAGAAGTAAAAAGTCAAGATAATAGTCAAGGTGCAATAATACAAGAAAGAGATAACGAACCGCATCCTATGGAAAATGTGGTATTCGTATGGAATAATATCAATCCCAACTCAAACAAATACGATACCCCGCTTGATATCAATATTAATGATGATTCAACTTTACCCGAACTCAACAGAAATTTTGATCCAGACGGTACCGATGACAATGAAGGCATGAACCTATCTCCAAGCCAAGCAGTAGGAAAGAAAGTGTTTAAATGTCCTCATTGTCCTTTCTGGGCCTCCACCGCGTCAAGGTTCCATGTACACATAGTAGGTCATTTAAATAAGAAACCATTTGAATGCTCCATTTGTAAATACAAATCTAATTGGCGTTGGGATATTACAAAGCACATAAAGCTCAAATCTACCAGAGACCCAGAACACAATGAAGCGAAAGTGCTTATGACCGACGAGACTGGCCGAAGAAACTACAGCAAATACAACAAATTTTTAGCTATGTCGGTGCTAAATGAAAATGGCGAAACCGCCTTCCACTATTTAGATATTAATGCCTCAGCTGATCCATCGATGGAAATTGACGATAATTTCAATGACACAAATGACTCTGCGAATCAATCATTTGAGATGCAACCGCTGAACTTGCAGACATATAGCAATGATCAAAAATATGAACAAATAGATAATAACATGGAATCCAAAAAGCCAAAGCGAACTTTATGgaaatgtaaaaaatgtaactacagAGATCCGTCCAGGGAAGCTTTGTTAGAGCACGTTCGTGAACATTCCCGCGTTGATAATAATCAAGAGGAAATAAAACCACAAAAAAAACCGGAAAATCCTACAGACCCAGCGGACTTGGCTTATCGTTGTGGTCACTGTAATCAGCTGTCAAACTGGAAGCATGTTATACAGAGACATTGTCGGCTGAAGCACGAAGGCGTTATAAAAGTAATAACAACTGTGAAGCCAAAACCAGAGTCGTTAATATCAATTAACGATGTGACCGGCGACTCCTGTAACAAGTGCCCATTCAAGAGCAACGATAAAAAGCTGATGTATGCGCACCTTCAGGGTCACCAACCTTCACCACAATCAATCTTTAAATGCTTCTTCTGCCCGTACTTTGTCAAAGACGAACACGAGCTAATACAACATTTACTTATACATGGAGTGTCTGAACCAGAAGAATACATTGCTAAGGCCATGGGACACAAGTCGCCATTGGCTGAAGGCAGTACTACTGCTAATGCGTCATCGGGTAATAAGCGACATAAATGCACGGAATGCCCATATGAAACAAATAGCAAGTCACAATTCATGTATCATGAACAGTTCCATCGACTTCCCGCGGATACACCTTATAAATGCCCGGAGTGTAATTACAGTGTGTCCAAAAGGCATCTATTACACCAGCATTTGAGAGTTCATGGTATATTGCCGAAGAAGACGGAATCAGAAGCCGAATTAGAAGCAAAATCGACTATTAAAACAGAATCTTCGATAAATCTCGACGAAATACCATTTGTATGGGTTTCGGCGAGAAACgaatttcataaaatgtataaatgcCGATACTGTTCTTATGTAAACACGCAAAAATGTAAAATTCCAAACCATGAAAAAATCCACTGTATTGTTCTCGAAAATACTGATGTCACGATGTACAAGTGTTCAGAGTGTAAGTTTACACGCGACAGCCCTATTAGATTGGCTGAACATTCTAAAACACACGGAGAAATATACGGTCGCATATACTGCCCAGTTGAGTCGGACATCCCTGATGAAGAACAAATAGCCAAATTACGTAAAGTTATCGAATCAGAAAAAAGAAACGGCACAGACTGCATATTGAAAGACAATAAACCACTAATtgataatgaaacaaaaatattatacttttgcCAAATGTGTCCAGCCAGATTTTTAAGCGACGGAGAACTGAAAGCGCATAATAATAACCATAACTTATCAAATCCCAGGAAATGTAAAAGCTGTGAGTTTTCTGTTCCGGAAGAAAGCGATTTAATCGAACACATATCTGTTCACACAGATGAATATCACACTAAAACGAAGATGCTGAAGTTCATACATAACTCGCATGCTGAACATAAACAACCCAATCTTGAACTTGTACACTGTCCTACTACATCAGAAATTACATGGGTTGTTACCAGTCCAAGCCCAAATTATGAATTAGCAAACGTTAAGAAATCAAATGACACGAAACCGAAAACTGTATCCAAACAATACTTATGTAGGTTATGCCCTGCGAAATTTTTCAAAACTTCTGCGCTGAGTTATCATGTGGGACTGCACGGTGGAGAAGGCGAACATAAGTGCAAAAAATGTAACTATTGTGTAAAGAACATAGGAAATTTGGCTAAACATGAATTGTTGCATGAAAATGAAGGTAAAACTTCAACTTGTGATTATGAATCTGGAGAAGATGTGGATTATAAAAATATCCCATTGTCGGGAACAGATCTATTTCAGAGGAAGACTGAAGCACAAAAAAGAGTACTTACTGACAAAGATAAGTTAGTAAAACCAAACGACCACTTCCCGCCGGTTTTACAAGCCGATCCTCAATTCGGTTATCTAATGCACGGCAATCCAGAATTTATTTACCCAACGTATTTGAAAAACGGTCGACAAAAGGAGAAGCGATACAAATGCCACAAATGTCCATCAGCTTTTGAAAAACGagaacaatataaaatacatttatctttACATGGGTCCAAACAACGGTACAAATGTGAACTTTGTGATTATTCCGTTAAGTATTATGCCAATTACGTTCAGCATATGCGAAAACATCAAATGAATGATGAGGCGCAAgcagaaagaaaaaaaagtaataatgaaCTTGAAGATTCAGAAATACAAGAGAATGTACAAGTAgacaatgataatattaaactaGCTATCAAAACGATGCCCAAGGGTGTCCCGAAAAGTGATTTTCAACAGTTTTCTGTGCGCGACCAACAAACTTTACGATTGTTACAACGCAGGCGttcgataaataacaataaggAACAATCACCATCTGATACATCACCTACGAAAGACCGAAAATTGCATATGTGTATTTTGTGCCCTTATACAAATCAGAGACAGGATGCTTTGAGTAATCATTACAGGCGTCACGACGATCCAGATGTAATTAGTGCAGCTAATCATAAATGCTCCTACTGCGACTTGGTTGTTGTGCAGTCACATTTTCTTCGCGACCACTTAAAATCACATTTTATGTATCAAAAGAATCTTACACCAGAATGTTACGTCGCCAACGAAGACGTCagtttcattataaataaaattgatgaaAATAATGAAGAAGAATCTACTGATCTCAAGTTAGATATAGATATACATACAGAAAGTAGTAAGTGcaatgaaaacaaaacatttgtcAAAATCCAAACTGGAGAACTCGTAGTGGAAtaa
- Protein Sequence
- MGLQIAEKDIVSCYSDSNDAVDTSAKKDAMQLAPDGQSQQSPNSMSDDAKSQKQNRKPARPLPPLIPLHSSTPTQNKTSTGEPPSKKFKENPIPETSETNKDCKFENLPVDISLIPVNSMPIAARKKNESFFDKLKERLLTETGEEGSLKCKNCGFESKCLSEHSVHEKNCVSNLNRMSTSTLLPSLSSTRCQNCRHRCKSSADLYVHMQTCKKERVKGDITTEVKSQDNSQGAIIQERDNEPHPMENVVFVWNNINPNSNKYDTPLDININDDSTLPELNRNFDPDGTDDNEGMNLSPSQAVGKKVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSICKYKSNWRWDITKHIKLKSTRDPEHNEAKVLMTDETGRRNYSKYNKFLAMSVLNENGETAFHYLDINASADPSMEIDDNFNDTNDSANQSFEMQPLNLQTYSNDQKYEQIDNNMESKKPKRTLWKCKKCNYRDPSREALLEHVREHSRVDNNQEEIKPQKKPENPTDPADLAYRCGHCNQLSNWKHVIQRHCRLKHEGVIKVITTVKPKPESLISINDVTGDSCNKCPFKSNDKKLMYAHLQGHQPSPQSIFKCFFCPYFVKDEHELIQHLLIHGVSEPEEYIAKAMGHKSPLAEGSTTANASSGNKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGILPKKTESEAELEAKSTIKTESSINLDEIPFVWVSARNEFHKMYKCRYCSYVNTQKCKIPNHEKIHCIVLENTDVTMYKCSECKFTRDSPIRLAEHSKTHGEIYGRIYCPVESDIPDEEQIAKLRKVIESEKRNGTDCILKDNKPLIDNETKILYFCQMCPARFLSDGELKAHNNNHNLSNPRKCKSCEFSVPEESDLIEHISVHTDEYHTKTKMLKFIHNSHAEHKQPNLELVHCPTTSEITWVVTSPSPNYELANVKKSNDTKPKTVSKQYLCRLCPAKFFKTSALSYHVGLHGGEGEHKCKKCNYCVKNIGNLAKHELLHENEGKTSTCDYESGEDVDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKSNNELEDSEIQENVQVDNDNIKLAIKTMPKGVPKSDFQQFSVRDQQTLRLLQRRRSINNNKEQSPSDTSPTKDRKLHMCILCPYTNQRQDALSNHYRRHDDPDVISAANHKCSYCDLVVVQSHFLRDHLKSHFMYQKNLTPECYVANEDVSFIINKIDENNEEESTDLKLDIDIHTESSKCNENKTFVKIQTGELVVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00006713; iTF_01082032;
- 90% Identity
- -
- 80% Identity
- -