Nnit030138.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947347705.1
- Location
- OX374621.1:22868989-22889555[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-76 1.5e-72 245.3 30.1 1 269 126 383 126 403 0.89 2 2 2.8 3.2e+04 -5.3 14.8 1 47 402 447 402 469 0.71
Sequence Information
- Coding Sequence
- ATGGGCAATGTCTCTAAGATGGCAACTCCTGACAATAGTGACGAGGAGAGTGGGGGAGCATTTACAGATGGTGATTTCGGTGATTCCGACGAGGATACAGTGGTAGAACGCATTGAAGAGTCCCGCAAATTACTTGTTCCTGTTAACGAAGCTATGAATACAGAAGTGCATAAGGAGAATGGATATTATGATAAACATATAGCCAAAACTAATGGGTTGGATGAGCAACCAAAACTGAATGGACACAAAAAGAGCGAAAATGGTCACTGCAGTGATTTGGAATCCCATAGCAATAGTGAATTAGAACTGAGGCGAGACACACATGGGGACCAAAACCCATCCATAGTTGGAATCCTTGGCAATCAGCAAAACCATGCGGAACAGCGCCTCGCAGCTCGGCGCGCCGCTCGTGCCGAGGCGCGGGACATCCGCATGAGGGAGCTAGAGCGGCAGCAGCGCGAACAGGAGGACCATGCGGACAAAGCGTACGACATGTACGCAGAGACGGTTGGGCGGCGGGGAGGGTCACGGCTAGCGGCGCTGAACTCCAGCACGCTGCACTCGCCGCGCCGCAGCTCAGAAGACTCTGCCGATGACACCTTCAGCATCAAAGACCTCAGGCACGAACTCAAAGAAGTCGAAGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAACTCCTCAAGGACAGGATAGAGGAGCTTCAGGAAGAACACGCGCAGTTACAGCGCGAGCACAAGGAGAAGTGTTCGGCTCACGAGCGGCTGAAGCGCGAGCACGCGTCGCTAGAGCGCGAGGCGGCCGCCACGCGCGCCGCCGTCACCGCGCGTGACGCCGCCGCCGCCGCCGCGGGCTACGCCTTCGTCGACGCCGACGCCGACGGGCGGCCCGACCACCTGCCGGCGCTCGCGCTCGTCAGCCACCGCTCCGAGCAGATGCTCAACGACGCGGGCGAGGGCACGCTCGACGTGCGGCTGCAAAAGTTGCTGGATTCAAAGCAAGCGCTCGAGTCTGAAGTTCGCAAACTAAAGTTACAGCTGAATGACGAGCGCGCCGCCAGGCAGAACGGGCAGGCCGCGCTGCACGACCAAGAGATGGAGACCGAGCTGGAGAGCCTTCGGCGGTGCGTGTCGGAGGCGAAAGGTCGCGCGGCGCGGGCCGAGGCCGAGGCGGCGCTGCAGGCCGCCGGCGTCGCGCGCCTCGAGGCACAGGTGGCCAGACTACGCGCGCGCCAGGACCACCAGGACGAACACGAGGAGCAGCTCAAGCACGAGCGACGCCGTCTGCAGCGAGAGGCGCGGGAAGCTCTTAACCGGGTGGAAGAATTGGAGACAGAGAACAGCCACCTGACGAAGCGTCTGGACAAGCTGAAGAACGCCAAGTCCGCACTCCTGAAGGAACTGTGA
- Protein Sequence
- MGNVSKMATPDNSDEESGGAFTDGDFGDSDEDTVVERIEESRKLLVPVNEAMNTEVHKENGYYDKHIAKTNGLDEQPKLNGHKKSENGHCSDLESHSNSELELRRDTHGDQNPSIVGILGNQQNHAEQRLAARRAARAEARDIRMRELERQQREQEDHADKAYDMYAETVGRRGGSRLAALNSSTLHSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEHAQLQREHKEKCSAHERLKREHASLEREAAATRAAVTARDAAAAAAGYAFVDADADGRPDHLPALALVSHRSEQMLNDAGEGTLDVRLQKLLDSKQALESEVRKLKLQLNDERAARQNGQAALHDQEMETELESLRRCVSEAKGRAARAEAEAALQAAGVARLEAQVARLRARQDHQDEHEEQLKHERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00006296;
- 90% Identity
- -
- 80% Identity
- -