Aeph002268.1
Basic Information
- Insect
- Acentria ephemerella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_943193655.1
- Location
- CALPDL010000013.1:148101-164471[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-75 1.1e-70 238.5 26.5 1 268 123 378 123 397 0.90 2 2 1 2.2e+04 -6.7 16.5 1 48 398 444 398 476 0.71
Sequence Information
- Coding Sequence
- ATGGGCAATGAGTCTAAAATGTCAACTCCCGATAACAGTGACGAGGAGAGTGGTGGAGCATTTACAGATGGCGATTTCGGTGATTCTGACGAGGACACAGTCTTAGAACGCATTGAAGAATCACGAAAATTACATGTTCCTGTTATCGAAGTAATGAATACACAAGTTCAAGCGGAGAACGGCTATCATGATACCAATGCCAATGGGTTGGATGAGCTTCCAAGAGTTAACGGTCACAAAAAAAGCGAAAATGGTCACTGTAGTGATAAAGAATCCCGTAGTGATGGTGAAGCAGAACTGCGTCGAGACATACACGGGGATCAAAACCCATCCATAGTTGGAATCCTTGGGTATCAGCAAAACCATGCAGAACAGCGCCTCGCAGCTCGGCGGGCCGCTCGTGCCGAGGCGCGGGAGATCCGCATGAGAGAGTTAGAACGACAGCAGCGAGAACAAGAGGACCATGCGGACAAGGCTTATGATATGTACGCAGAGACGGTCGGTCGGCGCGGCGGGTCACGGCTAGCGGCGCTAAGCCCCGGCACGCTGCACTCGCCGCGCCGCAGCTCTGAAGACTCCGCCGATGACACCTTCAGCGTCAAAGACCTTAGGCATGAGCTCAAAGAAGTACAAGAGAAGTTTCGCAAAGCGATGATTCTAAACGCCCAGCTGGACAATGACAAGGCGGCGCTAGGCTACCAGTTGGAACTGCTCAAGGACAGGATAGAGGAGCTCCAGGAGGAATACGCGCAGTTACAGCGCGAACACAAGGAAAAGTGTTCAGCTCACGAGCGCCTGAAGCGTGAGCATGCGTCTACGCAGCGGGAGGTGGTGGCGGTGCGCGCCGCCGTGCTCGCCAGGGACGCCGCCGCCGCCGCCGCGGGGTACGCCTTCGTCGACGCCGAGGGGCGGCCCGACGACCAGCTGCCGCCGCTCGCGCTCGTCAGCCACCAGTCCGAGCTGATGCTCAACGAGGCCGGGGAGGGCACGCTCGACGTGCGGCTCCAAAAGTTGCTGAGTTCGAAGCAAGCGCTCGAGTCTGAAGTACGCAAACTGAAGCTGCAGTTGAACGACGAACGTGCCGCCCGACAGAACGGCCAGGCCGCTCTGCACGACCAAGAGATGGAGACGGAGCTGGAGTCCCTTCGGCGGTGCCTGTCGGAGGCGAAGGGGCGCGCGGCGCGGGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGGCGTGGCGCGCCTCGAGGCACAGGTGGCCCGTCTGAGGGCGCGACAGGACCACCAGGACGAGCACGAGGAGCACCTCAAGCAGGAGCGGCGCCGTCTGCAGCGGGAGGCGCGAGAAGCACTCAACCGGGTGGAAGAATTGGAGACAGAAAACAGTCACCTGACGAAACGACTGGACAAGCTGAAGAACGCCAAGTCCGCATTGCTGAAGGAACTGTGA
- Protein Sequence
- MGNESKMSTPDNSDEESGGAFTDGDFGDSDEDTVLERIEESRKLHVPVIEVMNTQVQAENGYHDTNANGLDELPRVNGHKKSENGHCSDKESRSDGEAELRRDIHGDQNPSIVGILGYQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGSRLAALSPGTLHSPRRSSEDSADDTFSVKDLRHELKEVQEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSAHERLKREHASTQREVVAVRAAVLARDAAAAAAGYAFVDAEGRPDDQLPPLALVSHQSELMLNEAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNDERAARQNGQAALHDQEMETELESLRRCLSEAKGRAARAEAEAALQAAGVARLEAQVARLRARQDHQDEHEEHLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01081610;
- 90% Identity
- -
- 80% Identity
- -