Nnit021496.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374630.1:1156815-1165430[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.1e-12 1.1e-08 35.5 0.0 4 39 132 168 129 172 0.89 2 4 3.2e-11 4e-08 33.7 0.3 2 39 184 221 183 224 0.92 3 4 7.1e-14 9e-11 42.2 0.1 2 45 239 282 238 282 0.96 4 4 2.3e-18 2.9e-15 56.6 0.0 1 42 289 331 289 333 0.95
Sequence Information
- Coding Sequence
- ATGAAATCCCGGGATTCCAAGGAAAATTTGGTAGACCAGTCGCCCGAAACTGGGTTGGAGGAGTTGTCGTTACCGGCGCCGGCCGGACCGGCGGCCACACCCGTCTGTGTGAAGCAGGAAACGGCGGAGGCACCGCCGGCCCTCCTGCTGGAGAACCTTGAACCTGCTGCGCCTAACATTTCCACGGGCACAACGTTGCTGGATAGGCATCTAGCGATGCTCAGTTCCACCGAAGTGCCTGACTCGTCAGACTTTATGCCACTACTGGCTGTGAAAGACGAACCACTCTCAGAAGGAGAACAACTACAGATGAGTGGTGAAGACACGAGTGACTCATGCAGCCAGCCGGAGCCATTGCATAGCAGGGGCAGTCCCAAGAGCTGGACGCAGCAGGATATGGATAACGCCCTTGAAGCACTGAGGAAGCATAATATGAGTCTCACCAAGGCATCATCAACTTACGGTATACCGTCCACGACCTTATGGCAGCGTGCTCACAGACTCGGGATCGACACGCCGAAGAAGGAAGGCTCGTCCAAGTCTTGGAGCGAAGCGGACCTGAGAGGAGCTCTGCATGCTCTGAGGGCTGGTGCTATATCGGCAAATAAAGCCAGTAAGGCTTACGGTATCCCTAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGCCTGGCGGCGCCGTTCAACGCGGCGCCGACGGCCTGGCGCCGCGCGGACCTGGCGCGCGCGCTCGCCGCCATACGAGCCGGCGCCAGCGTGCAGCGCGCCGCCGCCGACCACGGGATACCCACCGGCACTCTATACGGGCGTTGTAAGAGAGAAGGCATAGAACTATCCCGATCTAATCCCACTCCGTGGTCAGAAGATGCTATGGGTGAAGCGCTGGAAGCTGTTAGAGTTGGTCAAATGTCAATAAATCAAGCTGCCATACATTATAATCTACCGTATTCTTCGCTGTACGGGCGATTCAAGAGATGCAAATATCAAATTCAGGGTCTCCAACAAGTACAGCCAGACATACCAAAGAACTTTGAATCGGAACACCAGAACCAACCTCAGAACATGCAGTACTACCACCAGATGCCTTTAGAAGCCCACCAATCCCACGATCTCAACTCGCACACTTACATGAACCACAGTCAGCTGAGTATGAGCGAACAGGATTTGGGTCTGATTGAGGAGCATTACGGAGGTCCGGCGATGTATTATAGCCATAACTGCAATAGCATCGTGACCAGTTGA
- Protein Sequence
- MKSRDSKENLVDQSPETGLEELSLPAPAGPAATPVCVKQETAEAPPALLLENLEPAAPNISTGTTLLDRHLAMLSSTEVPDSSDFMPLLAVKDEPLSEGEQLQMSGEDTSDSCSQPEPLHSRGSPKSWTQQDMDNALEALRKHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGSSKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRAGASVQRAAADHGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQGLQQVQPDIPKNFESEHQNQPQNMQYYHQMPLEAHQSHDLNSHTYMNHSQLSMSEQDLGLIEEHYGGPAMYYSHNCNSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01020145;
- 90% Identity
- iTF_00006218;
- 80% Identity
- -