Aeph019534.1
Basic Information
- Insect
- Acentria ephemerella
- Gene Symbol
- -
- Assembly
- GCA_943193655.1
- Location
- CALPDL010000162.1:1006406-1011749[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.7e-12 8.4e-09 35.3 0.0 4 39 177 213 174 217 0.89 2 4 1.1e-11 2e-08 34.1 0.2 2 39 229 266 228 269 0.92 3 4 7.4e-16 1.3e-12 47.4 0.3 2 45 284 327 283 327 0.96 4 4 1.2e-18 2.2e-15 56.4 0.0 1 42 334 376 334 378 0.95
Sequence Information
- Coding Sequence
- ATGCCGGGGCACAGGGTGCATGTCAAGAGTGAACCGCTCTCAGACGGAGACGACAGCGGCTCGCAGTTCACTTACGGCTACCTGACCAATCAGCTGCCATCGCTTGGTCACTGCCAAGTCAAATTGGAGAATGGGTGCCGACAGGAGACAGACGACCGCGCGCAACTTCTACATCATTTACAAACAGGTTTGGAGGAATTGTCATTGCCAACGCCGGCAGCACCGGCTGCGACACCCGTCTGCGTTAAGCAGGAAACGGCGGAGGCACCGCCGGCCATTCTGCTGGAAAACCTAGAACCTGCACCGCCTCACAACTGCACGGGTACAACATTGCTGGATAGACACCTAGCAATGCATAGTTCAACAGAAGTGCCTGACTCATCAGACTTCATGCCACTACTGGCGGTAAAAGATGAACCACTTTCGGAGGGAGAACAACTACAGATGAGTGGCGAAGACACGAGTGACTCATGCGGCCAGCCGGAGTTATCGCACAGTAGGGGCAGCCCCAAGAGCTGGACTCAGCAGGACATGGACAACGCCCTGGAGGCACTGAGAAAGCATAATATGAGCCTCACCAAGGCTTCATCGACTTATGGTATACCGTCCACAACCTTATGGCAACGAGCTCACAGGCTCGGGATTGACACGCCGAAGAAGGAAGGCTCGTCTAAGTCTTGGAGCGAAGCAGACTTGAAAGGAGCACTGCATGCTCTAAGGGCCGGTGCTATATCGGCTAACAAAGCCAGTAAGGCTTATGGTATCCCGAGCAGCACGCTGTACAAGATAGCGCGGCGTGAGGGCATTAGACTGGCGGCGCCGTTCAACGCGGCGCCGACGGCGTGGCGGCGCGCCGACCTGGCGCGCGCGCTCGCCGCCATCCGCGCCGGCGCCAGCGTGCAGCGGGCCGCCGCGCACTACGGCATACCCACCGGCACTCTGTATGGGCGTTGTAAGAGAGAGGGCATCGAATTATCCCGATCTAATCCTACTCCGTGGTCAGAAGATGCTATGGGTGAAGCATTAGAAGCTGTGAGAGTCGGTCAAATGTCAATAAATCAAGCTGCTATACATTATAATCTTCCATATTCTTCACTGTACGGGCGATTCAAGAGATGCAGATATCAAATTCAGGGTCTCCAACAAATGCAACATGACATACCTAAGAACGTTGAAATGGAACAACAGAACCAACCTCAAGACATGCCTTTCTACCACCAGCAGATGCCTATAGAAACCCACCAACACGATCATAACATACAAACGTTCATGAACCACAATCAGATGAGTATGAGCGAACACGATTTCAGTCTGATTGAGGAGCATTATGGAGGTCCAGCGACGTATTATAGCCAGAACTGCAACAGCATTGTGACCAGTTGA
- Protein Sequence
- MPGHRVHVKSEPLSDGDDSGSQFTYGYLTNQLPSLGHCQVKLENGCRQETDDRAQLLHHLQTGLEELSLPTPAAPAATPVCVKQETAEAPPAILLENLEPAPPHNCTGTTLLDRHLAMHSSTEVPDSSDFMPLLAVKDEPLSEGEQLQMSGEDTSDSCGQPELSHSRGSPKSWTQQDMDNALEALRKHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGSSKSWSEADLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRAGASVQRAAAHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCRYQIQGLQQMQHDIPKNVEMEQQNQPQDMPFYHQQMPIETHQHDHNIQTFMNHNQMSMSEHDFSLIEEHYGGPATYYSQNCNSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01020145;
- 90% Identity
- iTF_01081512;
- 80% Identity
- -