Mnit016810.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421429.1:819082-827793[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-10 7.9e-08 32.7 0.0 4 39 171 207 168 211 0.90 2 4 8.9e-12 3.3e-09 37.1 0.4 2 39 223 260 222 263 0.93 3 4 1.6e-12 6e-10 39.5 0.1 2 45 278 321 277 321 0.95 4 4 1.1e-17 4.1e-15 56.1 0.0 1 42 328 370 328 371 0.96
Sequence Information
- Coding Sequence
- ATGCCGGGCCACGGCTCGATGTGTGTCAAGCGTGAGCCGCCTTTCCACGGGGAAGACTTCTCGCACTGCTACTTATCCAACCAGGTGCCTTCACTCGGTCAGTTTTCAGTAAAATTGGAAAATGATACCCACAAGGAGCCCGACGACCCAGCCCGGATCTTACATCATCTACAGACAGGGTTGGAAGAGTTATCGATCCCAACGCCTGCTGGCCCGGCAGCCACTCCGGTGCAGGTATGCATCAAGCAGGAGCCTGGAGCCACTCTCACTCTGGAGAACTTGGAGCCGGCACCCAGCTCATCCACGGGATCAACGCTACTGGACCGACACATGGCAATGCTGAGTTCCACCGAAGTGCCAGACTCTTTAGACTTTATGCCACTTCTAGCTGTGAAAGATGAACCGCTTTCTGAAGGAGAGCAACTACAGACAAGTGGCGAAGACACTAGTGACTCGTGTGGTCCTTCAGAGCCGAGCCACTCCCGAAGTCCCAAGAGCTGGACGCAGCGAGACATGGACACTGCTCTAGAAGCGCTGCGGAAACACAACATGAGTCTTACCAAGGCTTCAGCTACATATGGAATTCCATCCACCACTCTTTGGCAAAGAGCACACAGACTGGGCATCGACACTCCGAAGAAAGAGGGGTCTTCGAAGTCTTGGAGCGAAGCAGACCTGAGAGCAGCGTTGCATGCACTGCGGGCTGGGGCCATCTCTGCCAATAAGGCCAGCAAAGCATATGGTATCCCAAGCAGTACCCTGTACAAGATAGCGCGTCGCGAGGGCATCCGTTTAGCAGCGCCCTTTAACGCCGCGCCCACCGCTTGGCGCCGCGCCGACCTCGCGCGGGCCCTGGCCGCCATCCGCGCCGGGGACACCGTGCAGCGGGCAGCCACGCAGCACGGCATCCCCACAGGAACGCTATACGGACGCTGTAAACGCGAAGGAATAGAACTTTCCCGGTCCAACCCCACGCCCTGGTCGGAAGACGCCATGGGAGAAGCATTAGAAGCAGTCAGAGTTGGTCAGATGTCAATTAACCAAGCGGCTATCCACTACAACTTACCATATTCCTCACTTTATGGACGGTTCAAGAGATGCAAATATCAAATACCgGGACAACCAGTGCAAGAAGATATACAAAATAACATAGAAATAGATCAGCAGACGCAACAACAGGACTTACAATACTACCAGCAACAAATGCCTCTTCAGCAACTGCACCACTTGGATCTTTACCAGGAAGTCCACAACGCGTACAACATGTGCCTAGACAGGAATGACTACTTACCTATTGATGATAGCTGA
- Protein Sequence
- MPGHGSMCVKREPPFHGEDFSHCYLSNQVPSLGQFSVKLENDTHKEPDDPARILHHLQTGLEELSIPTPAGPAATPVQVCIKQEPGATLTLENLEPAPSSSTGSTLLDRHMAMLSSTEVPDSLDFMPLLAVKDEPLSEGEQLQTSGEDTSDSCGPSEPSHSRSPKSWTQRDMDTALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSSKSWSEADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRAGDTVQRAATQHGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIPGQPVQEDIQNNIEIDQQTQQQDLQYYQQQMPLQQLHHLDLYQEVHNAYNMCLDRNDYLPIDDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01081512; iTF_00006218;
- 90% Identity
- -
- 80% Identity
- -