Nurt019430.1
Basic Information
- Insect
- Nymphalis urticae
- Gene Symbol
- -
- Assembly
- GCA_905147175.1
- Location
- LR990009.1:8550498-8556438[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0022 0.21 12.8 4.4 2 21 172 191 171 192 0.94 2 28 1.4 1.3e+02 3.9 1.5 1 23 225 248 225 248 0.95 3 28 0.12 11 7.3 1.4 3 23 253 275 252 275 0.91 4 28 0.018 1.6 9.9 2.7 2 21 279 298 278 299 0.93 5 28 0.0025 0.23 12.6 1.1 2 23 343 365 342 365 0.95 6 28 1.7 1.6e+02 3.7 0.5 3 23 373 392 372 392 0.93 7 28 0.011 1.1 10.5 1.6 1 23 398 420 398 420 0.98 8 28 0.0013 0.12 13.4 0.1 1 23 426 449 426 449 0.97 9 28 0.01 0.94 10.7 0.8 3 23 460 481 459 481 0.95 10 28 9.6e-05 0.0089 17.0 0.2 1 21 599 619 599 620 0.95 11 28 1.2 1.1e+02 4.2 0.1 3 23 626 646 625 646 0.91 12 28 0.1 9.3 7.5 0.1 2 23 652 674 651 674 0.91 13 28 8.3e-05 0.0077 17.2 1.9 1 23 679 701 679 701 0.99 14 28 0.27 25 6.2 4.7 1 21 704 724 704 725 0.95 15 28 0.0009 0.083 14.0 0.2 1 23 737 760 737 760 0.93 16 28 0.02 1.8 9.8 3.0 1 23 766 788 766 788 0.96 17 28 6.1 5.6e+02 1.9 0.3 1 23 822 845 822 845 0.87 18 28 0.00098 0.091 13.9 0.3 3 23 854 875 853 875 0.98 19 28 0.00096 0.088 13.9 1.2 2 21 989 1008 988 1009 0.94 20 28 4.2 3.9e+02 2.4 0.1 3 23 1016 1037 1015 1037 0.95 21 28 0.32 30 5.9 2.9 1 23 1042 1065 1042 1065 0.95 22 28 0.00023 0.021 15.9 0.2 2 23 1071 1092 1070 1092 0.96 23 28 2.9 2.7e+02 3.0 0.9 2 21 1096 1115 1096 1116 0.90 24 28 9.3e-05 0.0086 17.1 2.0 1 23 1142 1165 1142 1165 0.95 25 28 0.0013 0.12 13.4 0.4 1 23 1171 1193 1171 1193 0.92 26 28 0.1 9.4 7.5 0.1 1 23 1199 1221 1199 1221 0.97 27 28 0.0054 0.5 11.5 0.8 1 23 1227 1250 1227 1250 0.94 28 28 3.5e-05 0.0032 18.4 3.2 2 23 1257 1279 1256 1279 0.95
Sequence Information
- Coding Sequence
- ATGTCACGTCAAGTGGATGTAAAGGCTTTGGTATCACATGTAGTTCGCGGTGACGGTGTAAATAGGTGCCGAATATGTATGGGGGATACAACAGAAGGACAAGTACACTTAAGCGACACGGTTATAATGGATGGTGAAAAACCTGTAACGCTTTCTGAGCTTCTGGAGACTGTTACTGGAATCCAGATGCAGCTGGATACAGATGGAGTCCTGCCGGCAGGAGTATGTCCAGAATGCTCAAAATGTGCATTAAATGCAGCCGAATTCAGAACACTGTGTCACCATGCAATCAAGCAATGGGACTTAACTATTCAGCTCTTACAAAACTTACCGGGACAATGTAATGATAAAATCAAAACAATGTTTGCCATAATTGATCAAAGTCAAATGATTATCATTAATGATGATATGTCTGAAGATTCATTCGGTACAAATTCAGCTGCTCAAAGGTTAACTGCACATGTAAAACCTAAAACAATTGTGAATAAAAAAGATAATAATTTACCATTATGCAAATGCCCGAATTGTGGAAAGGAATTTCAGTATAGCCATCAATTAAGCCACCACTTGAAAGAATCAACGGATATGAAACGAGCGTGCCATATTTGCTCGGAAATCATGTTACGTAATGATTTGGTATCGCACATGTTAGACGTGCATAAAAAGAATCCATATGATTGCAAAAAATGTCCAGCACTGCTATATTCTCATAATCAATATATTAGACATTTAACGAAGGCACACACTCGCGGTGCGTGTACATGTATTGAATGTGGACGGAATTTTCAATCGTCAAATGCATATCATGCACACGTCTCTGTACACAGACCAAAAAGTTGTCCGAGTTGTGACAAGATGTTCCGCAATCAAACATGCTATGTCCACCACGTAAAGGAATGTTGCAATTTAGATAAAAATAGAGAAGACACACATCACACAAAGAATAAAGTTACAGTAGACGTAATGAATGAAAACAGCAAGAAAAATATAAAAGTAGGTCTACGCGGGAGTGCGGCTAAGGAATGCATATGTGATCACTGCGGGAAGAAGTTTGCTGGGAAAAAGTTTGTAGCTGCACACATACAAATAGTTCACATGAAGAACACGCATCGTCCTTGTGTGTACTGTGGGAAGTTCCTAGCGGCAGCGCATATGACACAGCATGTTAAGAAACACGAATCGGACCCATCGTACACATGTCAACATTGTAATATTGTTCTCAAGACTCGACTAGGATATATTCAGCATTTGCGTCTCCACACTGGGGAGAGACCGTACGCGTGTGATATTTGCGGGGAATCGTTTTCTGCTTCGTCCAGACGATCGGAACACATACGTAAAGCACATAAAAGCTCAGATATAGTATTGAAGCAGGCATGTCATTTGTGTCCAGCGAAATTTCGGCTGCCTTACAGATTGAAGAAACATTTAAAAGCGGTTCATAACGACGAAGGTGACAGCTCATTATCGCAATACGAATGCCAAGTCGAGGAGGAAATCGAACTACCCGCGGGCCTGTGCTGCAACTGCACGAACAGCGCCATCTCTGGGTGGCAGTTCAGACAGCTATGTCTCGAATCGAACAGAAATTGGATGAAAACAACACTATTATTGTCGAAAGCGAAAATTCAACCAACAAACAAAGATAAAACCATTTTCATAGGCTGTAACACATTGATAAGAGACAACATTGAAAGTAAACACACAACAGATGCTGTGGATAGACTTAATTCACTCATCGGCTTAAAGAAAAAAACTAGATCGAAATACAAAAAAAATGATTTGAGTAACATTTATAAGTGTAAAGATTGTGGCAAAGATTTCGCGATTCCGTATTTCTTGAACCGTCATTTACTGAGTACGAAAAAACGCGCTTGCAATCTCTGCGGTAAGATTTTGCCGAGGGAACGTTTGGCTAAACATTTGAACCGAGTTCACGCTAAGATTGTACTGAATTGCGATATCTGCGAGAAATTATTCGACGAACAACTCGAATTGGAAAAACACAAGATATTATTACACGGCGACGGCTCATATCAATGTAACACGTGTAAGAATGGATTTAAAAACGAGAGATCTCTCCGTGCGCATATGTACACGCACACGCTTTTCAATTGCTCGTCCTGCAACGCTAGTTTTGAAAATAGAAAATGTTACACACACCACAGAAGAATCTGCGACGGCTCTAAGCACACAACGGAAGGTATATATGAATGCGACGATTGTGGCAATATATACACGAAGAAGCCATCGTTGAAGGTTCACATCGTTCAGAAACATTTGAATGTTCTGCCGTACGTTTGTCAAATATGCGGGAAGCGTAGTTCGACGAAAAATCATCACAAGGCCCATGAACTAATCCACAAAACAGAAAGGAAAGTCTACCAATGTTTCTGCGGTGCGAAGATGCTCACAGAACTCGGTTTCAATATGCACCAGAGGATACATTCTGGTGAAAAGCCTTACGAATGCGGGGTATGTGGGGACAGGTTCCTGTCGGCATCTAGAAGGTTGGATCACATCAAGAGGAGACACAGGAGTAAGGAGATGGCGCACGGTTGTGACCAATGCGAGGCTAGGTTCGTTAGGCCGTTTGAACTAAAAAAACATTACAAATCTGCGCATTTGATGAGCCCGCAAGAGGAATATTTATTTCCGAAGGGTTTTTGTTCAGATTGCACGAGGGTTGCGATTGCCTCGTACGAGTTCAGGGTGTTTGTACGAAAGTCCGAGAAGCTATGGACGAACTGTATAGAGTCGCTTCAAACTGTCCCAACTTTGATCACATCTCAAAAATCGATTTACGCGATCGTACGTAATAACTTACTTATTCACACGGTCAGTAACTTCGAGGGTAACGCAAAAGACTTGTTGAACCATCTGACGAATCGATTCGTAGCGAGGAAGATTTTAATAGAGAGGAAGCCGAGGCACCCGAGACACCCCCGGACTGGACCGTCGTGTAGCTGCACGGATTGTGGCAAAAGTTTCCTTAGTCCGTATTATTTAAACATGCATTTGCGTAATAGCGGTCAGAAAGAGGCGTGCTGGCTCTGTGGTGCGATGGTGATAAGAGGGAAGGAGATGCACGAACATATGTCGAAAATTCACAAGACCGACATGTTTTTGTGTACCGAATGCCCGATGCTGTTCAAAAGCGAGCTGGAACGGAAGAGACACATTAAGAAATGTCATGGACCAGGTGTACTGACGTGCGCCGATTGCGGGAGAACGTTCCAGAGGCCCGGATCGTTCGAAGTGCATTCACAAATGCACGCAGTGAGGACGTGCCGGGCTTGTGGCGCGCAGTTCGCGAACCGTGGTTGTTACAGGGAACACAGGTCGAAATGCGAACCGAACGCTAAGCCGGACCTGAAAACGATACCGAGAAATAAAAGATCGAACATTCGAGATCCAGCTACGTTCACTTGTGACTATTGTAATAAAACGTATCATTCGCGTCCGCAGTTAAAGAATCACATACTATGGATACATATGGACATAAGACCACACCAGTGTCAATGGTGCGGGAAGCGTTTCTACACCCCAGCGCGTTTAGCTGAACATTCGGTTGTGCACACGCGCGTCAGAAACTTTGAATGCGATATTTGTGGCGCGAAATTAGTATCCAAAATGGCGGCCGTGTACCATAGACGAAGGCATACGGGCGAAAGGCCATACGAGTGTCAGGATTGCGGTGAAAAGTTTATATCGTCGTCTCGAAGATCAGAACACGCGAAACGCAGGCACAACAGAGGTTCTCGTCTCCAATGTACTGAGTGTCATGCGAGTTTTGTTAGGAACCATGAATTAAAGAAACATATGGATAAAGTTCATAATCCAGATAATCACTTGTTGGTTAAAATAAAAAAAGAAAAATTTTTCCCAATAGCGACAACTCAAAAGCTTTGA
- Protein Sequence
- MSRQVDVKALVSHVVRGDGVNRCRICMGDTTEGQVHLSDTVIMDGEKPVTLSELLETVTGIQMQLDTDGVLPAGVCPECSKCALNAAEFRTLCHHAIKQWDLTIQLLQNLPGQCNDKIKTMFAIIDQSQMIIINDDMSEDSFGTNSAAQRLTAHVKPKTIVNKKDNNLPLCKCPNCGKEFQYSHQLSHHLKESTDMKRACHICSEIMLRNDLVSHMLDVHKKNPYDCKKCPALLYSHNQYIRHLTKAHTRGACTCIECGRNFQSSNAYHAHVSVHRPKSCPSCDKMFRNQTCYVHHVKECCNLDKNREDTHHTKNKVTVDVMNENSKKNIKVGLRGSAAKECICDHCGKKFAGKKFVAAHIQIVHMKNTHRPCVYCGKFLAAAHMTQHVKKHESDPSYTCQHCNIVLKTRLGYIQHLRLHTGERPYACDICGESFSASSRRSEHIRKAHKSSDIVLKQACHLCPAKFRLPYRLKKHLKAVHNDEGDSSLSQYECQVEEEIELPAGLCCNCTNSAISGWQFRQLCLESNRNWMKTTLLLSKAKIQPTNKDKTIFIGCNTLIRDNIESKHTTDAVDRLNSLIGLKKKTRSKYKKNDLSNIYKCKDCGKDFAIPYFLNRHLLSTKKRACNLCGKILPRERLAKHLNRVHAKIVLNCDICEKLFDEQLELEKHKILLHGDGSYQCNTCKNGFKNERSLRAHMYTHTLFNCSSCNASFENRKCYTHHRRICDGSKHTTEGIYECDDCGNIYTKKPSLKVHIVQKHLNVLPYVCQICGKRSSTKNHHKAHELIHKTERKVYQCFCGAKMLTELGFNMHQRIHSGEKPYECGVCGDRFLSASRRLDHIKRRHRSKEMAHGCDQCEARFVRPFELKKHYKSAHLMSPQEEYLFPKGFCSDCTRVAIASYEFRVFVRKSEKLWTNCIESLQTVPTLITSQKSIYAIVRNNLLIHTVSNFEGNAKDLLNHLTNRFVARKILIERKPRHPRHPRTGPSCSCTDCGKSFLSPYYLNMHLRNSGQKEACWLCGAMVIRGKEMHEHMSKIHKTDMFLCTECPMLFKSELERKRHIKKCHGPGVLTCADCGRTFQRPGSFEVHSQMHAVRTCRACGAQFANRGCYREHRSKCEPNAKPDLKTIPRNKRSNIRDPATFTCDYCNKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECQDCGEKFISSSRRSEHAKRRHNRGSRLQCTECHASFVRNHELKKHMDKVHNPDNHLLVKIKKEKFFPIATTQKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01508261;
- 90% Identity
- iTF_01506545;
- 80% Identity
- -