Npol020848.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- zfh1
- Assembly
- GCA_905220585.1
- Location
- HG992268.1:2185147-2188230[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.021 1.8 9.7 0.7 1 23 71 94 71 94 0.96 2 17 0.27 24 6.1 0.1 1 23 165 187 165 187 0.95 3 17 0.00027 0.024 15.6 0.2 1 23 191 213 191 213 0.98 4 17 0.0031 0.28 12.2 1.9 1 23 218 241 218 241 0.95 5 17 0.01 0.88 10.7 0.3 2 23 248 270 248 270 0.92 6 17 0.045 4 8.6 6.4 1 23 277 300 277 300 0.96 7 17 0.00031 0.028 15.4 5.4 1 23 306 328 306 328 0.97 8 17 0.82 72 4.6 0.2 1 19 475 493 475 498 0.82 9 17 0.086 7.6 7.7 0.2 2 23 524 545 523 545 0.96 10 17 0.0074 0.66 11.1 0.8 1 23 567 589 567 589 0.98 11 17 6.6e-06 0.00058 20.7 0.8 1 23 593 615 593 615 0.99 12 17 6.6e-06 0.00058 20.7 0.2 1 23 620 643 620 643 0.96 13 17 4.3e-05 0.0038 18.1 0.4 2 23 650 672 650 672 0.97 14 17 4.3e-05 0.0038 18.1 0.4 1 23 679 702 679 702 0.98 15 17 0.062 5.5 8.2 6.6 1 23 708 730 708 730 0.96 16 17 7.6e-08 6.7e-06 26.8 0.5 1 23 736 758 736 758 0.99 17 17 2.8 2.5e+02 3.0 0.1 5 23 766 785 765 785 0.93
Sequence Information
- Coding Sequence
- ATGCCATCTTCTCCTGCTGTAAGAAGTAATACGCCATCTCGTAGCCAGTCACCAATTTCACTAGGAAGGAGAAGTCTAACGCCAGTTAAAAGTGTGGTCTCCGTCATGCCCACACCGAAAATCATGAAAAAACAGGCTGACTATCGCCAAAACGCATTAACTGTCTTTGAATTCTCAACTGTTTATCCGTTTATTTATGGAAACAATAAATTTAAATGCTTCATTTGCTCTCAACCTTTTCTCGAAACTTCTCTTTTGAGACAACATATGAATGAAAATCATACGTTTGCACCATTAAAAAGATTACTAAATAATCGAAGAGAGAACGTGTTAAAGGTAGATGTCGGCGAGTTGATGTGTAAATTGTGTTCAGTGAAGCCAAAGGATTTATTACAACTAAAATTTCACTTGAAAGAAGACCATCAGAAACCTATAGACCCAGATTTACAGGATAACATGATACCGTTCAAATTGGAAGAAGAGGATGGTTCCTATAAGTGTGTTATATGTGACCAATTATTTATAAAAGTCCGAATACTCGTTATACATATGAGCGTCCATTTTAATAATTACAGCTGTGAAATTTGTGGTTCAGGATTTATGACGTTGCGACTCTTAAAGAAGCATTTAGAAGTTCACGAAACTGGCAATTTCCCTTGTGATAGATGTAACAAAGTATTCAGCACGACTCATAAGAGATCGCTTCATATACGAGGCGTTCATCTCAAACAATACCCTCGTCGGTGTCCGATATGTCCCGAGCGTTTTAATTCGAATTACAGGCGAACGATTCATCTTCAAGACGTCCATAATCAATCCACCAGAGTACATAAATGTGAGACCTGTGGACGTGGATTCAATCTCAAATATCATTTGATATGTCATACTCGATCGGTGCATTTGCAGGAGAGAAACCATCAGTGTAAAGTTTGCTTACAAAGGTTCTGCAACAAAGAAACTCTAAAACGTCATATGGTTATACATACAGGCATCATCGTAGAAACAAATGCATCGATTTTATTAAAAGACGATGACGGCCGAGAAATACAACTTAAACTTCTAAAGAATCCAATTAACATTAAGAATCTTATTTGTGAATACGAAGACGATTCAGAAGTAATAAATAAACGATTAGAGGAGGATCTTCAGACAGATAAAAAATTAAATACATGTGAAAAAACAGAAATTATAATGAAAAAATTACCCACTGTTTCCATGTTAAAAGAACCTTTGTTGCTAAATGATATACCAGATCAGAAAAATGGTATAAAATCGGTTGTATGTAGCGTAAAAACTGTGAAAAATAGACCTTTTGGTAATTTAAAAAAAAGAAATACGTTTGACTATCATAAATGGAAGCAAAATGCAATAACTCTTATTGAGTTTTCGTACGTGTATCCCTTCATTCATGCCAGCAATAAATATAAATGTTTTGTCTGTGCAAAATCGTTCCTGGAGGCAGTACTTTTGAGAGAGCATTCAACGGGGGTTCATACAATTAAGGATTTCAGACAAGAACTGAGTAATAGAGTCCGAGATAAAAATCTTAAAGTAGACGTTACAATTATGCAATGCAAATTATGTCAATCAGTTTCTCCTAATATTTATTCCTTAAAAGTTCATCTGAAAGGTCATGGGATTAAAATAGATCCTGATTTTCAAGATAATATTATTCCATTTAAATTGGAAGAGGCCAATTTCAAATGTCAAATATGCAATGAAACTTATCTCAAACTACGTTTACTGATAATACACATGAGCAAACACTTCAATAACTACAGCTGTGAAATATGTGGATCTGTGTTTATATCTTTACATCTTCTAACGAGGCATTTGCAAACACATAAAATCGGAAATTATCCCTGTGAAATATGCGACAAGGTCTTTAGTAATTCTGCAAAAAGAACAATGCATATGAGAGGCGTACATTTAAAGCAGTACCCACGGACGTGTCCGATTTGTCCGGAAAGATTCAATTCGAATTATCAGAGAACAAAACACTTGCGTATTGTCCACAATCAAAGTTCTGAATTATTCAAGTGTGAAACTTGCGGCCGAGAGTACGACCTCAAGTATCAGTTGTTGGTGCATATAAGATCTGTTCACATGCAGGAGAGGAACCATGAGTGTGTTATTTGTCATTCGCGTTTTTTCTCGAAATATTGTTTGTCCAGACACATGGTGATTCATACAGGTGATAAAAAATTTAAATGTGAGATCTGTGGTAAGGCTTACGCAAGAAGTAAAAATCTGAAAGAGCACATTAAGTCTCATAATGTTGGGGAGGTGTCTACGATGTGCGGTGAAGATTATAATGGTCGCACAACATTAGATACACATCTGAATAACTCTCACGGAGTACTTAACTGA
- Protein Sequence
- MPSSPAVRSNTPSRSQSPISLGRRSLTPVKSVVSVMPTPKIMKKQADYRQNALTVFEFSTVYPFIYGNNKFKCFICSQPFLETSLLRQHMNENHTFAPLKRLLNNRRENVLKVDVGELMCKLCSVKPKDLLQLKFHLKEDHQKPIDPDLQDNMIPFKLEEEDGSYKCVICDQLFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHETGNFPCDRCNKVFSTTHKRSLHIRGVHLKQYPRRCPICPERFNSNYRRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTRSVHLQERNHQCKVCLQRFCNKETLKRHMVIHTGIIVETNASILLKDDDGREIQLKLLKNPINIKNLICEYEDDSEVINKRLEEDLQTDKKLNTCEKTEIIMKKLPTVSMLKEPLLLNDIPDQKNGIKSVVCSVKTVKNRPFGNLKKRNTFDYHKWKQNAITLIEFSYVYPFIHASNKYKCFVCAKSFLEAVLLREHSTGVHTIKDFRQELSNRVRDKNLKVDVTIMQCKLCQSVSPNIYSLKVHLKGHGIKIDPDFQDNIIPFKLEEANFKCQICNETYLKLRLLIIHMSKHFNNYSCEICGSVFISLHLLTRHLQTHKIGNYPCEICDKVFSNSAKRTMHMRGVHLKQYPRTCPICPERFNSNYQRTKHLRIVHNQSSELFKCETCGREYDLKYQLLVHIRSVHMQERNHECVICHSRFFSKYCLSRHMVIHTGDKKFKCEICGKAYARSKNLKEHIKSHNVGEVSTMCGEDYNGRTTLDTHLNNSHGVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01078411; iTF_01079253; iTF_00985375; iTF_00843721;
- 90% Identity
- iTF_01078411;
- 80% Identity
- -