Basic Information

Insect: Nymphalis io
Gene Symbol: -
Assembly: GCA_905147045.1
Location: LR989924.1:1037579-1040792[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.019 1.7 9.7 0.7 1 23 118 141 118 141 0.96

2 14 0.00039 0.036 15.0 0.2 1 23 212 234 212 234 0.97

3 14 0.0029 0.26 12.3 1.9 1 23 239 262 239 262 0.95

4 14 0.0092 0.84 10.7 0.3 2 23 269 291 269 291 0.92

5 14 1.8 1.6e+02 3.5 0.1 1 19 446 464 446 469 0.81

6 14 0.063 5.7 8.1 0.2 2 23 495 516 494 516 0.96

7 14 0.021 1.9 9.6 0.7 1 23 538 560 538 560 0.98

8 14 5.4e-06 0.00049 20.9 1.0 1 23 564 586 564 586 0.99

9 14 4.4e-05 0.004 18.0 0.2 1 23 591 614 591 614 0.96

10 14 3.9e-05 0.0036 18.2 0.4 2 23 621 643 621 643 0.97

11 14 4e-05 0.0036 18.2 0.4 1 23 650 673 650 673 0.98

12 14 0.032 2.9 9.0 7.6 1 23 679 701 679 701 0.97

13 14 7e-08 6.4e-06 26.8 0.5 1 23 707 729 707 729 0.99

14 14 2.4 2.2e+02 3.1 0.0 5 21 737 753 736 754 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.019	1.7	9.7	0.7	1	23	118	141	118	141	0.96
2	14	0.00039	0.036	15.0	0.2	1	23	212	234	212	234	0.97
3	14	0.0029	0.26	12.3	1.9	1	23	239	262	239	262	0.95
4	14	0.0092	0.84	10.7	0.3	2	23	269	291	269	291	0.92
5	14	1.8	1.6e+02	3.5	0.1	1	19	446	464	446	469	0.81
6	14	0.063	5.7	8.1	0.2	2	23	495	516	494	516	0.96
7	14	0.021	1.9	9.6	0.7	1	23	538	560	538	560	0.98
8	14	5.4e-06	0.00049	20.9	1.0	1	23	564	586	564	586	0.99
9	14	4.4e-05	0.004	18.0	0.2	1	23	591	614	591	614	0.96
10	14	3.9e-05	0.0036	18.2	0.4	2	23	621	643	621	643	0.97
11	14	4e-05	0.0036	18.2	0.4	1	23	650	673	650	673	0.98
12	14	0.032	2.9	9.0	7.6	1	23	679	701	679	701	0.97
13	14	7e-08	6.4e-06	26.8	0.5	1	23	707	729	707	729	0.99
14	14	2.4	2.2e+02	3.1	0.0	5	21	737	753	736	754	0.92

Sequence Information

Coding Sequence: ATGGACTCTATATCGACGGAAAAACAGACGCCGGCAAAACGGATAGTACCACTGTTTCAAGTGGCTTACGATCGAAGTCTTTGCAAACCTTTGGGGACAGTGACAGCTTTTCGAAAATTGCGCCTTAAGAGCCAGTCTAATATGCCAACTTCTCCTGCTGTAAGAAATAATACGCCATCCCGTAGCCCGTCACCAATCTCACTGGGAAGGAGAAGTGTAACGCCAGTCAAAAGTGTCATCTCTGTCTTACCCACACCGAAAATAATGAAAAAGCAAGCTGACTATCGCCAGAATGCATTAACTGTTTTCGAATTCTCAACCGTCTATCCATTTATTTATGGGAACAATAAATTTAAATGCTTCATTTGCTCTCAACCTTTTCTCGAAACTTCTCTTTTGAGACAACATATGAATGAAAATCATACGTTTGCACCATTGAAAAGATTACTAAATAATCGAAGGGAGAACGTGTTGAAGGTAGATGTCGGCGAGTTGATGTGTAAATTGTGTTCAGTGAAGCCGAAGGATTTATTACAGCTAAAGTTTCATTTGAAAGAAGACCATCAGAAACCTATAGATCCAGATTTACAGGATAACATGATACCGTTTAAATTAGAAGAAGAGGATGGTTCCTATAACTGCGAAATTTGTGGTTCAGGATTTATGACGTTGCGACTCTTAAAGAAGCATTTAGAAGTTCACGAAACCGGCAATTTCCCTTGTGATAGATGTAACAAAGTCTTCAGCACGACTCATAAGAGATCGCTTCATATACGAGGCGTTCATCTCAAACAGTACCCTCGCCGTTGTCCGATATGTCCGGAGCGTTTCAATTCGAATTACAGGCGAACGATCCATCTTCAAGACGTACACAATCAATCGACCAGAGTACATAAATGCATCATCGTAGAAACAAATTCATCGATTTTATTAAAAGACGATGACGGCTGTGAAATAAAACTTAAGCTTCTAAAGAATCCAATTAATATTAAAAATCTTATTTGTGAATACGAAGACGATACAGAAGTAATAAATAAACGATTAGAGGAAGATGATATTCAGACAGATAAAAAATTAAACACGTGTGAAAAGAAAGAAATTAAAATGATAAAATTACCCACAGTTTCCATGTTAAAAGAACCTTTGCTGCTAAATGATATACCAGATCAGAAAAGTGGTATAAAATCGGTTGTATTTAATGTAAAAACTGTGAAAAATAGACCTTGTGGTAACTTAAAAAAAAGGAACACATTTGACTATCATAAATGGAAGCAAAATGCAATAACTCTTATTGAATTTTCGTACGTGTATCCCTTCATTCATGCCAGTAACAAATATAAATGTTTTGTCTGTGCAAAAGCGTTCCTGGAGGCAGTTCTTTTAAGAGAGCATTCAACGGGGGTTCATACAATTAAGGATTTCAGACAAGAACTGAATAACAGAGTCCGAGATAAAAATCTAAAAGTAGACGTTACAATTTTGCAATGCAAATTATGTCAATCAGTTTCTCCTAATATTTATTCGTTAAAAGTTCACCTGAAAGGTCATGGCATTAAAATAGATCCTGATTTTCAAGATAATATTATTCCATTTAAATTGGAAGAGGACATTTTCCAGTGTCAATTATGCAATGAAACTTACCTCAAGCTACGTTTACTGATAATACACATGAGCAAACACTTCAATAATTACAGCTGTGAAATATGTGGATCCGTTTTTATATCATTGCATCTCCTAAAGAGGCATTTGCAAACACATAAAATCGGACATTATCCCTGTGAAATATGCGACAAGGTCTTCAGTAATTCTGCAAAGAGAACAATGCACACGAGAGGCGTACATTTAAAGCAATATCCACGAACGTGTCCGATTTGTCCGGAAAGATTCAATTCGAACTATCAGAGAACAAAGCACTTGCGTATCGTCCACAATCAAAGTTCTGAATTGTTCAAGTGTGAAACCTGCGGCCGAGAGTACGATCTTAAGTATCAGTTGTTGGTGCATATAAGATCTGTTCACATGCAGGAAAGAAACCACAAGTGTGGTATTTGTCATTCGCGATTTTTCTCGAAATATTGTTTGTCCAGACATATGGTGATTCATACTGGTGACAAGAATTTTAAATGTGAGATCTGTGGAAAGGCGTACGCAAGAAGTAAGAATTTGAAAGAGCACATCAAATCCCATGACGTTGGGGAAGTGTCTACGATTTGCGGTGAAGATTATAATGGTCGCACAACTTTGGCTACCCATCTGAATATTTCTCAATGA
Protein Sequence: MDSISTEKQTPAKRIVPLFQVAYDRSLCKPLGTVTAFRKLRLKSQSNMPTSPAVRNNTPSRSPSPISLGRRSVTPVKSVISVLPTPKIMKKQADYRQNALTVFEFSTVYPFIYGNNKFKCFICSQPFLETSLLRQHMNENHTFAPLKRLLNNRRENVLKVDVGELMCKLCSVKPKDLLQLKFHLKEDHQKPIDPDLQDNMIPFKLEEEDGSYNCEICGSGFMTLRLLKKHLEVHETGNFPCDRCNKVFSTTHKRSLHIRGVHLKQYPRRCPICPERFNSNYRRTIHLQDVHNQSTRVHKCIIVETNSSILLKDDDGCEIKLKLLKNPINIKNLICEYEDDTEVINKRLEEDDIQTDKKLNTCEKKEIKMIKLPTVSMLKEPLLLNDIPDQKSGIKSVVFNVKTVKNRPCGNLKKRNTFDYHKWKQNAITLIEFSYVYPFIHASNKYKCFVCAKAFLEAVLLREHSTGVHTIKDFRQELNNRVRDKNLKVDVTILQCKLCQSVSPNIYSLKVHLKGHGIKIDPDFQDNIIPFKLEEDIFQCQLCNETYLKLRLLIIHMSKHFNNYSCEICGSVFISLHLLKRHLQTHKIGHYPCEICDKVFSNSAKRTMHTRGVHLKQYPRTCPICPERFNSNYQRTKHLRIVHNQSSELFKCETCGREYDLKYQLLVHIRSVHMQERNHKCGICHSRFFSKYCLSRHMVIHTGDKNFKCEICGKAYARSKNLKEHIKSHDVGEVSTICGEDYNGRTTLATHLNISQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01080089;
90% Identity: -
80% Identity: -