Basic Information

Insect: Nymphalis polychloros
Gene Symbol: -
Assembly: GCA_905220585.1
Location: HG992268.1:7687555-7694079[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.0022 0.19 12.8 4.4 2 21 172 191 171 192 0.94

2 28 1.4 1.2e+02 3.9 1.5 1 23 225 248 225 248 0.95

3 28 0.11 10 7.3 1.4 3 23 253 275 252 275 0.91

4 28 0.017 1.5 9.9 2.7 2 21 279 298 278 299 0.93

5 28 0.0024 0.21 12.6 1.1 2 23 343 365 342 365 0.95

6 28 1.6 1.4e+02 3.7 0.5 3 23 373 392 372 392 0.93

7 28 0.011 0.98 10.5 1.6 1 23 398 420 398 420 0.98

8 28 0.0013 0.12 13.4 0.1 1 23 426 449 426 449 0.97

9 28 0.0099 0.87 10.7 0.8 3 23 460 481 459 481 0.95

10 28 3.2e-05 0.0028 18.5 0.6 1 21 598 618 598 619 0.95

11 28 1.5 1.3e+02 3.8 0.1 3 23 625 645 624 645 0.91

12 28 0.049 4.3 8.5 0.1 2 23 651 673 650 673 0.91

13 28 0.0001 0.009 16.9 2.3 1 23 678 700 678 700 0.99

14 28 0.12 11 7.2 3.7 1 21 703 723 703 724 0.95

15 28 0.00088 0.078 14.0 0.3 1 23 736 759 736 759 0.93

16 28 0.019 1.7 9.8 3.0 1 23 765 787 765 787 0.96

17 28 5.9 5.2e+02 1.9 0.3 1 23 821 844 821 844 0.87

18 28 0.00064 0.057 14.4 0.4 3 23 853 874 852 874 0.98

19 28 0.0029 0.25 12.4 1.3 2 21 988 1007 987 1008 0.93

20 28 3.6 3.2e+02 2.6 0.1 3 23 1015 1036 1014 1036 0.95

21 28 0.31 28 5.9 2.9 1 23 1041 1064 1041 1064 0.95

22 28 0.00022 0.02 15.9 0.2 2 23 1070 1091 1069 1091 0.96

23 28 2.8 2.5e+02 3.0 0.9 2 21 1095 1114 1095 1115 0.90

24 28 9e-05 0.0079 17.1 2.0 1 23 1141 1164 1141 1164 0.95

25 28 0.0013 0.11 13.4 0.4 1 23 1170 1192 1170 1192 0.92

26 28 0.098 8.7 7.5 0.1 1 23 1198 1220 1198 1220 0.97

27 28 0.0052 0.46 11.5 0.8 1 23 1226 1249 1226 1249 0.94

28 28 8.1e-06 0.00071 20.4 2.3 2 23 1256 1278 1255 1278 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.0022	0.19	12.8	4.4	2	21	172	191	171	192	0.94
2	28	1.4	1.2e+02	3.9	1.5	1	23	225	248	225	248	0.95
3	28	0.11	10	7.3	1.4	3	23	253	275	252	275	0.91
4	28	0.017	1.5	9.9	2.7	2	21	279	298	278	299	0.93
5	28	0.0024	0.21	12.6	1.1	2	23	343	365	342	365	0.95
6	28	1.6	1.4e+02	3.7	0.5	3	23	373	392	372	392	0.93
7	28	0.011	0.98	10.5	1.6	1	23	398	420	398	420	0.98
8	28	0.0013	0.12	13.4	0.1	1	23	426	449	426	449	0.97
9	28	0.0099	0.87	10.7	0.8	3	23	460	481	459	481	0.95
10	28	3.2e-05	0.0028	18.5	0.6	1	21	598	618	598	619	0.95
11	28	1.5	1.3e+02	3.8	0.1	3	23	625	645	624	645	0.91
12	28	0.049	4.3	8.5	0.1	2	23	651	673	650	673	0.91
13	28	0.0001	0.009	16.9	2.3	1	23	678	700	678	700	0.99
14	28	0.12	11	7.2	3.7	1	21	703	723	703	724	0.95
15	28	0.00088	0.078	14.0	0.3	1	23	736	759	736	759	0.93
16	28	0.019	1.7	9.8	3.0	1	23	765	787	765	787	0.96
17	28	5.9	5.2e+02	1.9	0.3	1	23	821	844	821	844	0.87
18	28	0.00064	0.057	14.4	0.4	3	23	853	874	852	874	0.98
19	28	0.0029	0.25	12.4	1.3	2	21	988	1007	987	1008	0.93
20	28	3.6	3.2e+02	2.6	0.1	3	23	1015	1036	1014	1036	0.95
21	28	0.31	28	5.9	2.9	1	23	1041	1064	1041	1064	0.95
22	28	0.00022	0.02	15.9	0.2	2	23	1070	1091	1069	1091	0.96
23	28	2.8	2.5e+02	3.0	0.9	2	21	1095	1114	1095	1115	0.90
24	28	9e-05	0.0079	17.1	2.0	1	23	1141	1164	1141	1164	0.95
25	28	0.0013	0.11	13.4	0.4	1	23	1170	1192	1170	1192	0.92
26	28	0.098	8.7	7.5	0.1	1	23	1198	1220	1198	1220	0.97
27	28	0.0052	0.46	11.5	0.8	1	23	1226	1249	1226	1249	0.94
28	28	8.1e-06	0.00071	20.4	2.3	2	23	1256	1278	1255	1278	0.95

Sequence Information

Coding Sequence: ATGTCACGTCAAGTGGATGTGAAGGCCCTGGTATCGCATGTAGTTCGCGGTGACGGTGTAAATAGGTGCCGAATATGTATGGGGGATACGACAGAAGGACAAGTACATTTAAGCGACACGGTTATAATGGATGGTGAAAAACCCGTAACGCTTTCTGAACTGTTGGAGACTGTTACTGGAATCCAGATGCAGCTGGATACAGATGGAGACCTGCCAGCGGGAGTGTGTCCAGAGTGCTCGAAATGTGCATTAAATGCAGCCGAATTCAGAACATTGTGCCACCATGCAATCAACCAATGGGACTTAACTATTCAGCTCCTACAGAACTTACCGGGACAATGTAATGATAAAATCAAAACAATGTTTGCCATAATTGATAACAATCAAATGATTATCATTAATGATGACACGTCTGAAGATACATTCGGTACAAATTCAGCTGCTCAAAGATTAACTGCACATGTAAAACCTCAAACTATTGTAAATAAAAAAGATAATAATTTATCATTATGCAAATGCCCTAACTGTGGCAAAGAATTTCAGTATAGCCATCAATTAAGTCACCACTTGAAAGAATCAACGGACATGAAACGAGCGTGCCATATTTGCGCTGAAATCATGTTACGTAATGATTTGGTATCGCACATGTTAGACGTGCATAAAAAAAATCCTTATGATTGCAAGAAATGTCCCGCACTGCTATATTCTCATAATCAATATATTAGACATTTAACAAAGGCACATACTCGCGGGGCATGTACATGTATTGAATGTGGAAGAAATTTCCAATCATCGAATGCATATCATGCGCATGTCTCTGTACACAGACCAAAAAGTTGTCCGAGTTGTGACAAGATGTTCCGTAATCAAACCTGTTATGTTCACCATGTGAAAGAATGTTGCAATTTAGACAAAAATAGAGAAGACACACATCACACAAAGAACAAAGTCACAGTAGACGTCATGAATGAAAACAGCAAGAAAAATATTAAAGTAGGTCTCCGAGGGAGTGCATCTAAGGAATGCATATGTGATCACTGCGGGAAGAAGTTTGCTGGGAAAAAGTTTGTTGCTGCTCATATACAAATTGTTCACATGAAGAACACCCACCGACCTTGCGTGTACTGTGGGAAGTTCCTAGCGGCAGCGCACATGACACAGCATGTTAAGAAACACGAATCGGACCCGTCATACACATGTCAACATTGTAATATTGTTCTCAAGACTCGACTAGGATATATTCAGCATTTGCGTCTCCACACTGGAGAGAGACCGTACGCGTGTGATATTTGCGGGGAATCGTTTTCTGCTTCGTCTAGACGCTCGGAACATATACGTAAAGTACATAAAAGCTCCGATATAGTATTGAAGCAAGCTTGTCATTTGTGTCCAGCGAAATTTCGGCTGCCTTATAGATTGAAGAAGCATTTGAAAGCGGTTCATAACGACGAAGACGACTCATTATCGCAATACGAATGTCAAGTCGAGGAGGAAATCGAACTACCCGCGGGCCTGTGCTGCAACTGCACGAACAGCGCCGTCTCTGGGTGGCAGTTCAGACAGCTATGTCTCGAATCGAATCGAAAATGGATGAAGACAACGCTATTATTGTCGAAAACGAAAATTCAGCCGACAAACAAAGATAAAACCATTTTCATAGGCTGTAACACTTTGATCAGAGACAACATTGTAAATAAACACACAACAGATGCCGTCGAAAGACTTAATTTACTCATCGGTTCAAAGAAAAAAACAAGATCAAAATACAAGAAAAATTATGTAACTAACATTTATAAGTGTAAGAATTGCGGCAAAGATTTCACGGTACCTTATTTCTTGAATCGTCATTTATTAAGTACGAAAAAACGCGCTTGCACTCTCTGCGGTAAGATCTTACCGAGGGAACGTTTGGCTAAACATTTGAACAAAGTTCACGCCAAGTTTGTACTGAATTGCGATATCTGCGAGAAATTATTCGATGAACAAGTTGAATTGGAAAATCATAAGATTTTATTACACGGCGATAGCTCATATCAATGTAAAACGTGTAAGAATGGATTTAAAAACGAGAGATCACTCCGTGCCCATATGTACACGCACACACTGTTCAATTGCTCGTCCTGTAACGCTAGTTTCGAAAATAGAAAATGCTATACTCATCACATAAAAATCTGCGACGGTTCCAAACACGCGACGGAAGGTATATATGAATGCAATGAATGTGGTAATATATACACGAAGAAGCCATCGTTGAAGGTTCACATCGTTCAGAAACATTTGAACGTTCTGCCGTATGTTTGTCAGATATGCGGGAAACGTAGTTCGACGAAAAATCATCACAAGGCTCATGAACTTATACACAAAACAGAAAGGAAAGTCTACCAATGCTTCTGCGGTGCGAAAATGCTAACAGAACTCGGTTTTAATATGCACCAGAGGATACATTCCGGTGAAAAGCCTTACGAATGTGGAGTATGCGGTGACAGGTTCCTGTCGGCTTCGAGAAGGTTGGATCACATCAAGCGAAGACACAGGAGTAAGGAGATGGCGCACGGTTGTGACAAATGCGAGGCTAGGTTCGTTAGGCCGTTCGAACTGAAAAAACATTACAAATCAGCGCATTTGATGAGCCCGCAAGATGAATATTTATTCCCAAAGGGTTTTTGTATAACTTGTACGAGTGTTGCGATTGCCTCGTACGAGTTCAGAGTGTTGGTACGAAAGTCCGAGAAGCTATGGACGAACTGTATAGAGTCGCTTCAAACTGTTCCAACTTTGATCACATCCCAGAGATCGATTTACGCAATCGTACGTAATAACTTACTAATTCATACGGTCAGTAACTTCGAGGGTAACGCTAAAGACTTGTTGGACCATCTCACGGATAGATTTGTAGCGAGGAAGATTTTGATAGAGAAGAAGCCGAGACACCCGAGACACCCCAGGACCGGCCCGTCGTGCAGCTGCAGGGACTGTGGTAAAAGTTTCCTTAGCCCGTATTATTTGAATATGCATTTGCGTAATAGCGGCCAGAAAGAGGCGTGCTGGCTCTGTGGTGCGATGGTAATAAGAGGAAAGGATATGCACGAACATATGTCCAAAATTCACAGGACTGACATGTTTTTGTGTACCGAATGCCCGATGCTCTTCAAAAGCGAACTGGAACGGAAGAGGCACATTAAAAAATGTCACGGGCCAGGTGTACTGACGTGCGCCGATTGCGGGAGAACGTTCCAGAGGCCCGGATCGTTCGAAGTGCATTCGCAAATGCACGCAGTGAGGACGTGCCGGGCTTGTGGTGCGCAGTTCGCGAACCGTGGTTGTTACAGGGAGCACAGGTCGAAATGCGAACCGAACGCGAAACCAGACTTGAAAACGATACCAAGGAATAAAAGATCGAACATTCGAGATCCGGCAACGTTCACTTGTGACTATTGTAATAAAACGTATCATTCGCGTCCGCAGTTAAAGAACCACATACTGTGGATTCATATGGACATAAGACCACACCAGTGTCAATGGTGCGGGAAGCGTTTCTACACTCCGGCGCGCTTAGCTGAACATTCGGTTGTGCACACGCGCGTCAGGAACTTCGAATGCGATATTTGTGGCGCGAAATTAGTATCTAAAATGGCGGCCGTGTACCATAGACGAAGGCATACGGGTGAAAGGCCATACGAATGTCAGGATTGTGGTGAGAAGTTTATATCGTCTTCTCGAAGATCAGAACACGCGAAACGCAGACACAACAGAGGTTCTCGTCTCCAATGTCCTGAGTGTCACGCGAGTTTTGTTAGGAATCATGAATTAAAGAAGCATATGGATAAAGTTCATAATCCAGACAATCACTTGATGCTTAAAATAAAAAAAGAAAAGACTTTACCAATGGCGACAACTCATAATCTTTAA
Protein Sequence: MSRQVDVKALVSHVVRGDGVNRCRICMGDTTEGQVHLSDTVIMDGEKPVTLSELLETVTGIQMQLDTDGDLPAGVCPECSKCALNAAEFRTLCHHAINQWDLTIQLLQNLPGQCNDKIKTMFAIIDNNQMIIINDDTSEDTFGTNSAAQRLTAHVKPQTIVNKKDNNLSLCKCPNCGKEFQYSHQLSHHLKESTDMKRACHICAEIMLRNDLVSHMLDVHKKNPYDCKKCPALLYSHNQYIRHLTKAHTRGACTCIECGRNFQSSNAYHAHVSVHRPKSCPSCDKMFRNQTCYVHHVKECCNLDKNREDTHHTKNKVTVDVMNENSKKNIKVGLRGSASKECICDHCGKKFAGKKFVAAHIQIVHMKNTHRPCVYCGKFLAAAHMTQHVKKHESDPSYTCQHCNIVLKTRLGYIQHLRLHTGERPYACDICGESFSASSRRSEHIRKVHKSSDIVLKQACHLCPAKFRLPYRLKKHLKAVHNDEDDSLSQYECQVEEEIELPAGLCCNCTNSAVSGWQFRQLCLESNRKWMKTTLLLSKTKIQPTNKDKTIFIGCNTLIRDNIVNKHTTDAVERLNLLIGSKKKTRSKYKKNYVTNIYKCKNCGKDFTVPYFLNRHLLSTKKRACTLCGKILPRERLAKHLNKVHAKFVLNCDICEKLFDEQVELENHKILLHGDSSYQCKTCKNGFKNERSLRAHMYTHTLFNCSSCNASFENRKCYTHHIKICDGSKHATEGIYECNECGNIYTKKPSLKVHIVQKHLNVLPYVCQICGKRSSTKNHHKAHELIHKTERKVYQCFCGAKMLTELGFNMHQRIHSGEKPYECGVCGDRFLSASRRLDHIKRRHRSKEMAHGCDKCEARFVRPFELKKHYKSAHLMSPQDEYLFPKGFCITCTSVAIASYEFRVLVRKSEKLWTNCIESLQTVPTLITSQRSIYAIVRNNLLIHTVSNFEGNAKDLLDHLTDRFVARKILIEKKPRHPRHPRTGPSCSCRDCGKSFLSPYYLNMHLRNSGQKEACWLCGAMVIRGKDMHEHMSKIHRTDMFLCTECPMLFKSELERKRHIKKCHGPGVLTCADCGRTFQRPGSFEVHSQMHAVRTCRACGAQFANRGCYREHRSKCEPNAKPDLKTIPRNKRSNIRDPATFTCDYCNKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECQDCGEKFISSSRRSEHAKRRHNRGSRLQCPECHASFVRNHELKKHMDKVHNPDNHLMLKIKKEKTLPMATTHNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01508261;
90% Identity: iTF_01506545;
80% Identity: -