g2610.t1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nymphalis c-album
Gene Symbol
-
Assembly
GCA_905332345.1
Location
CAJOBY010000004.1:4309689-4315004[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.16 13 7.0 3.4 2 22 186 206 185 206 0.95
2 14 0.28 21 6.3 0.5 2 23 460 481 459 481 0.96
3 14 0.0024 0.18 12.8 0.5 2 23 561 582 560 582 0.97
4 14 0.066 5 8.2 2.1 1 23 590 612 590 612 0.97
5 14 0.094 7.1 7.8 3.4 1 23 648 670 648 670 0.95
6 14 0.00039 0.03 15.2 5.4 1 23 678 700 678 700 0.99
7 14 0.35 27 6.0 4.3 1 23 785 807 785 807 0.99
8 14 3 2.3e+02 3.0 1.2 1 19 863 881 863 885 0.91
9 14 0.022 1.6 9.8 0.8 1 23 981 1003 981 1003 0.95
10 14 0.012 0.94 10.5 0.9 1 23 1009 1031 1009 1031 0.95
11 14 0.0053 0.41 11.7 2.6 1 23 1121 1143 1121 1143 0.97
12 14 0.00013 0.01 16.7 1.4 1 23 1149 1171 1149 1171 0.99
13 14 0.63 48 5.2 2.0 1 23 1264 1286 1264 1286 0.96
14 14 0.011 0.87 10.6 3.9 1 23 1297 1319 1297 1319 0.98

Sequence Information

Coding Sequence
ATGGGTCTACAGTACATGGACAAAGACATCGTGAGTTGTAATAGCGACTCTAACGAGGCTTCATCTTCTGATGCTGTAAAAAgtgaaaatttacatataacaaaagaaatagaAAATGATATTACATCGGATGAAgcaaaaaatcaaaaacaatgtAAGAAAATACCAAGACCGATTCCACAACTTATTCCTTTAAATGCATCAACgccaaatcaaaacaaaacacttcCTGGAGAGCCTCCAgctaaaaaatttaaagaaaccaCATCTCAGTCAGATATTCAAAAAACTGATAACTTACCAATAGATATTACTTTAACTCCAGTAAATAATGTAGTAAGTAAAGATATTTCTAACCGCAAGAAGAATGAATCATTTTTCGATCGATTAAAAGAAAGGTTATTAACCGAAACGGGAGAAGAAGGTTCACTTATATGTAAGAATTGTGGTTTCGAAAGTAAATGTTTGTCAGAACATTCAGTTCACGAAAAAAATTGTACGTCTCAATCAAATCGAATGTTAACCAGCGCATTACATTCGAGCTTAGGATCGACAAGGTGCCAAAACTGTAGGCATCGATGCAAGTCAAGTGCCGATTTATACATACACATGCAAACATGCGGAAAGAAAGATAACAAATTGGAACACGCATCAGAAGTAAATAATCAAGATAGTAGCGAAGCTGTAACGGGTAATCAAGAGAAGGAATTAGAGCCACATCCAATGGAAAACGTCGTTTTTGTTTGGAATAATATAAGTCACGACTCAAATAAATTCGATGTACCATTAGACATAAGTATTAATGATGATTCTACGCTACCAgaacaaaatagaaattttgATCCTGATATTGTTGatgataatgaaaatatgaatCTATCACCTAGTCAAGCAGTTgggaaaaaagtttttaaatgtcCACACTGTTTGTTTTGGGCATCAACTGCTTCAAGATTTCATGTCCATATAGTCGGACATTTAAACAAGAAACCCTTTGAATGCTCATTGTGTAAGTATAAATCAAATTGGAGATGGGATATCACAAAGCATATTAAACTTAAATCCGCTCGAGATCCTGATCATGTAGAAGCAAAAGTACTTATGACAGATGAGACTGGTAGGCGCAATTAcagcaaatataataaatttttagcaATGCCTATTTTAAACGAAAACGGTGAAAATGAATTTCATTACATTGACCAAAATACATCTGTGGATACTGCGCTAGACGATGATGCGTTTAGTGATGTAACTGATGGAATGAACACGCCATTTGAAATGCAACCACTTAATTTACAAACTCTGAACAGTGATCACAAATATGAATTAGACAACAGAAATCTTGATGctaaaaaacctaaaaaaacaCTTTGGAAATGTAAAAAATGCAATTACAAAGATTCATCGAGAGAAGCTTTACTGGAACATGTTCGTGAGCACTCAAAACCGGATGAGTGTTTGGAAGAAACAAAGCCTATCATTAACAAAAAACCCGAGAACATGCCTGATCCAGCCGACTTGGCGTATAGATGTGGACACTGCAACCAATTATCTAATTGGAAGCACGTTATACAGAGACATTGCCGATTAAAGCACGATGGCGTGATTAAAGTCATCACCACAGTTAAACCAAAACCCGATTTAAATGCAACGTCAACCAACGAAATCGGTTCTGACACTTGCACGAAATGTCCATATAAAGCCAGCGACAAGAATACACTTATGGCGCATTTACGACAACATCAGCCGTCACCGcactcaatatttaaatgttacttttgCCCATTCTTTGTCAAAGACGAACACGAATTGACTCAACATCTTATTTTACACGGCATTACTGATCCAGAAGATTATATATCAAAAGCAATGGGATGCAAATCGCCTTTACCAGAGCAAGGAGTACACGTTTTACCAAACTCTTCGTCGACGAAAAGACATAGATGTACAGAATGTCCATATGAAACTAATAGTAAGTCTCAATTTATGTATCATGAGCAATTCCATCGGTTACCGGCTGATACTCCCTACAAATGTCAAGAGTGTAATTATAGTGTTTCAAAAAGGCACTTGCTTCATCAACACATGCGGGTTCATGGCATTATTGCGAAAAAAGGTGAAATAGAAGCTGAGTTAGAATCTTTTTCATCCATCTCTAATCAGGTAGATGCACAGTCTGAATTTTCGATGAACCTTGATGAAATTCCTTTCGTGTGGGTATCGGCTAAGAATGAGTTtcacaaaatgtataaatgtcgTTATTGTTCATACGTAAACtcacaaaaatgtaaaataccTAATCATGAAAAAATACACTGTATTGTCTTTGAAAATAGtgacataacaatatataaatgtctGGAATGTAAATTCACATGCGATAATAAAGTAAGATTATCAGAGCACTCCAAAACTCACGGAGAAATTTATGGCAGAATTTACTGTCCTGTTGAATCAGATTTACCTGATGAAGAACAAATAGCTAAGTTGCGTAAAGTTATTgagagagaaaaaaataatatggaaGATGAATTTGTCAAAGAAGAGGACAATCAAAATGAAGGTAAAGAAACGAGAACATTATACTTCTGTCAAAAATGTCCAGCGAGATTCTTTGCAGACAGCGAATTAAAAGTCCACGATAAATTTCACGAttcaacattttcaaataaatgtaagGCTTGTGAATTTTCAGTACCTCtagaaaatgaattaattacccATAATTTGGTGCACACCGatgaatataatacaaaaacaaaaatgcttAAATTCGTTCATAAAATTCATAGTCTTTATAAAGAACCTAAACTGCAGCTTTTTCATTGTCCACTTACTTCAGATGTGACATGGGTAGTAGCTAATCCCggaaaaaattatgaatttcaCGAAAATGTTACCAAGAAATCATCAGATATAAAACACGTGCCAAAACAGTATTTTTGCAAAGAATGTCCAGCCAAGTTCTTTAAAACTTCTGCATTAAGTTATCATATGGGACTACATGGAGGAGAAGGTgaacataaatgtaaaaaatgtagttATGCTGTTAAAAATATTGGAAACCTAGCTAAACATgaaatattacatgaaaatgaaaataaatctgCTACTTGTGATTATGAATCTGGTGATGatttagattataaaaatatacctttatcGGGAACTGACTTATTCCAAAGAAAAACAGAAGCCCAGAAAAGAGTTTTAACAGACAAAGATAAGCTTGTAAAGCCAAATGATCATTTCCCACCAGTGCTTCAAGCTGATCCTCAGTTTGGATATTTAATGCACGGCAATCCAGAATTCATTTATCCAACTTATCTTAAAAATGGACGACAAAAGGAAAAACGCTATAAATGTCACAAATGCCCATCAGCATTTGAAAAACGtgaacaatacaaaatacatttatcatTGCATGGTTCAAAACAAAGATACAAATGTGAATTATGCGACTATTCTGTGAAGTATTATGCCAATTATGTCCAACATATGCGAAAACATCAAATGAACGATGAAGCCCAAgcagaaagaaagaaagatgTAAATGGTTACGTAGAATCTGAAGTCGAAAATACTGAAAACAAAAAAGATGAAAATGGTGAAAACTTTACCTTAGCTATTAAAACTATGCCCAAAAGGCCTCCTCGAACTGATTTCCAACAATTTTCAATTAGTGATCAACAAACACTCCGATTATTACAACGTCGACGTTCTATGAATAATACAGGAAAGGACCCTACTACTTCAGACCTTTCTCCTACAAAAGATCGGAAACTACACATGTGCCTTTTATGCCCATACACGAATCAACGTCAAGATGCCCTTAGTAATCATTATAGAAGGCATGATGAAACTGACGTCCTCAGTGGTGGTAATCATAAATGTTCATTCTGTGATTTAGTAGTGGTTCAATCGCATTTTCTTCGAGAGCATTTAAAAACTCATTTTAATTACCAAAAGAACCTAACCCCCGAGTGTTTCGTGGCTAATGAAAACGTTACTTTTTCTGTTACAAAATTAGaagaaaatgaagaaaataaatcgACTTGTGATCTCAAATTAGATATGCTAAATCAAAATAGTATGTGCaatgataacaaaatatttgtaaaaattaaaacaggtGAACTGTTTGttgaatag
Protein Sequence
MGLQYMDKDIVSCNSDSNEASSSDAVKSENLHITKEIENDITSDEAKNQKQCKKIPRPIPQLIPLNASTPNQNKTLPGEPPAKKFKETTSQSDIQKTDNLPIDITLTPVNNVVSKDISNRKKNESFFDRLKERLLTETGEEGSLICKNCGFESKCLSEHSVHEKNCTSQSNRMLTSALHSSLGSTRCQNCRHRCKSSADLYIHMQTCGKKDNKLEHASEVNNQDSSEAVTGNQEKELEPHPMENVVFVWNNISHDSNKFDVPLDISINDDSTLPEQNRNFDPDIVDDNENMNLSPSQAVGKKVFKCPHCLFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPDHVEAKVLMTDETGRRNYSKYNKFLAMPILNENGENEFHYIDQNTSVDTALDDDAFSDVTDGMNTPFEMQPLNLQTLNSDHKYELDNRNLDAKKPKKTLWKCKKCNYKDSSREALLEHVREHSKPDECLEETKPIINKKPENMPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDLNATSTNEIGSDTCTKCPYKASDKNTLMAHLRQHQPSPHSIFKCYFCPFFVKDEHELTQHLILHGITDPEDYISKAMGCKSPLPEQGVHVLPNSSSTKRHRCTECPYETNSKSQFMYHEQFHRLPADTPYKCQECNYSVSKRHLLHQHMRVHGIIAKKGEIEAELESFSSISNQVDAQSEFSMNLDEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIVFENSDITIYKCLECKFTCDNKVRLSEHSKTHGEIYGRIYCPVESDLPDEEQIAKLRKVIEREKNNMEDEFVKEEDNQNEGKETRTLYFCQKCPARFFADSELKVHDKFHDSTFSNKCKACEFSVPLENELITHNLVHTDEYNTKTKMLKFVHKIHSLYKEPKLQLFHCPLTSDVTWVVANPGKNYEFHENVTKKSSDIKHVPKQYFCKECPAKFFKTSALSYHMGLHGGEGEHKCKKCSYAVKNIGNLAKHEILHENENKSATCDYESGDDLDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKDVNGYVESEVENTENKKDENGENFTLAIKTMPKRPPRTDFQQFSISDQQTLRLLQRRRSMNNTGKDPTTSDLSPTKDRKLHMCLLCPYTNQRQDALSNHYRRHDETDVLSGGNHKCSFCDLVVVQSHFLREHLKTHFNYQKNLTPECFVANENVTFSVTKLEENEENKSTCDLKLDMLNQNSMCNDNKIFVKIKTGELFVE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00247684; iTF_00248571; iTF_00777125; iTF_00843955; iTF_00825205;
90% Identity
iTF_00825205; iTF_00843955;
80% Identity
-