Basic Information

Insect: Heliconius cydno
Gene Symbol: -
Assembly: GCA_036379175.1
Location: FAPN01019797.1:1-7358[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.21 26 6.5 3.2 2 21 188 207 187 208 0.94

2 14 0.15 20 6.9 0.6 2 23 463 484 462 484 0.96

3 14 0.037 4.8 8.9 0.4 2 23 565 586 564 586 0.96

4 14 0.068 8.8 8.0 1.4 1 23 594 616 594 616 0.97

5 14 0.084 11 7.8 3.4 1 23 652 674 652 674 0.95

6 14 0.00035 0.045 15.3 5.4 1 23 682 704 682 704 0.99

7 14 0.12 15 7.3 3.1 1 23 789 811 789 811 0.99

8 14 2.7 3.5e+02 3.0 1.2 1 19 867 885 867 889 0.91

9 14 0.053 6.8 8.4 0.6 1 23 983 1005 983 1005 0.92

10 14 0.0051 0.66 11.6 1.0 1 23 1011 1033 1011 1033 0.96

11 14 0.0048 0.61 11.7 2.6 1 23 1123 1145 1123 1145 0.97

12 14 3.5e-05 0.0045 18.4 1.2 1 23 1151 1173 1151 1173 0.99

13 14 3.1 4e+02 2.8 2.4 2 23 1267 1288 1266 1288 0.86

14 14 0.002 0.26 12.9 3.7 1 23 1299 1321 1299 1321 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.21	26	6.5	3.2	2	21	188	207	187	208	0.94
2	14	0.15	20	6.9	0.6	2	23	463	484	462	484	0.96
3	14	0.037	4.8	8.9	0.4	2	23	565	586	564	586	0.96
4	14	0.068	8.8	8.0	1.4	1	23	594	616	594	616	0.97
5	14	0.084	11	7.8	3.4	1	23	652	674	652	674	0.95
6	14	0.00035	0.045	15.3	5.4	1	23	682	704	682	704	0.99
7	14	0.12	15	7.3	3.1	1	23	789	811	789	811	0.99
8	14	2.7	3.5e+02	3.0	1.2	1	19	867	885	867	889	0.91
9	14	0.053	6.8	8.4	0.6	1	23	983	1005	983	1005	0.92
10	14	0.0051	0.66	11.6	1.0	1	23	1011	1033	1011	1033	0.96
11	14	0.0048	0.61	11.7	2.6	1	23	1123	1145	1123	1145	0.97
12	14	3.5e-05	0.0045	18.4	1.2	1	23	1151	1173	1151	1173	0.99
13	14	3.1	4e+02	2.8	2.4	2	23	1267	1288	1266	1288	0.86
14	14	0.002	0.26	12.9	3.7	1	23	1299	1321	1299	1321	0.98

Sequence Information

Coding Sequence: ATGGGTCTACAGTACATGGAAAAGGAAACTATTAGTTGTAACAGTGACTCTAACGACGCTTCCACTTCTGACTTTGGTAGAAAAGATAATATGCAAATAACGAATGAAACAGATGTCAATTTCTTATCAGAAGATGTTAAGAACCAGAAGCAAAGTAGAAAAATTCCACGGCCTATCCCACAATTAATACCTTTAAACGCTTCAACGCCAAATCAAAGTAAAACCAGTGGTGAACCTCCTTCTAAGAAACTTAAAGAGTCTGCACAGTCACCTGAAGTGAATAATGCTCAAAAAATTGACAATCTTCCTATAGATATCAGTCTTACTCCAGTTAGTAATAGCACTTCAAAAGACGTCTGTGTTCGTAAAAAGAATGAGTCCTTCTTTGATAGGCTCAAAGAACGATTACTAACAGAAACAGGAGAAGAAGGGTcactaatttgtaaaaattgtgGTTTCGAGAGTAAATGCTTATCTGAACATTCAGTTCATGAAAAGAATTGTACATCGCTTTCAAATCGTCAATTAACAAACTCGTTACATTCCAGTTTAGGATCGACTCGGTGTCAAAATTGTCGACATAGGTGTAAATCAAGTGccgatttatatatacatatgcaaTCTTGCAAGAAGAAAGATGTCATACAAGAAATTACGTCTGAAGTACACAACCAAGACAGCAGTGAAGCTGTCGCTATCAATAGTGAAAAAGAAGTAGAGCCGCATCCCATGGAAAACGTTgtttttgtatggaataaCATAAGTCacgatacaaataaatttgatacaCCTCTAGACATTAGTATCAACGATGATTCCACACTACCAGAACAACATAGAAACTTTGATTCTGAAATAGTTGATGATAATGATGCTGAAAGCATGAATTTGTCTCCTAGTCAAGCGCTtggtaaaaaagtatttaaatgtcCTTATTGCCTGTTTTGGGCATCAACAGCTTCAAGATTTCACGTTCATATAGTTggacacttaaataaaaaaccttttgAGTGTTctttatgtaagtataaatcAAATTGGCGATGGGatataacaaaacatattaagttaaaatccGCTAGAGATCCTGAACATGCTGAAGCTAAGGTGATTATGACCGATGAGACCGGCCGCCGTAACTAcagcaaatataacaaattccTAGCAATGcccaatttaaatgaaaatggtgagaataaatttcattatatagatCAAAGCATATCTGCAGATACTGTGTTAGATGATGAAATATTCCATGATTTAAACGAAGGTGGGAATCAGCCCTTTGAAATGCCTCTAAACTTGCAAACACAGAGCctcgaaaataaatttgaatatgacGATAGAATATTTGATgcaaaaaaaccaaaaaggaCGCTGTGGAAGTGTAAGAAATGCAATTACAAAGATTCATCCAAAGAGGCACTGTTGGAACATGTCCGTGAGCATTCTAAGCCAGATGATGGAGAGGAAATAAGGATTCCaaataatattcacaaaaaGCCAGATAACATGCCAGATCCAGCCGATTTGGCGTATAGATGCGGGCACTGCAACCAGTTGTCCAACTGGAAACATGTTATACAGAGACATTGTCGCCTGAAGCACGATGGAGTGATTAAGGTGATAACAACAGTTAAGCCAAAACCTGAATCTTCTTCTCTATCAGCAAATGAAATTAACAGTGACACTTGCACGAAATGTCCATTTAAAGCAACAGACAAAAACATGCTTTTGGCACACTTACAACAACATCAACCTTCACCACAGTCAATATTCAAGTGCTATTTCTGTCCTTTCTTTGTAAAGGATGAACACGAACTCATTCAGCATCTTATTTTGCACGGTATTACTGATCCCGAGGATTACATATCTAAGGCCATGGGGTGCAAATCTCCTTTACCGGAACAGACACATCAAAACCCATTAAATTCTTCATCAACGAAACGTCATCGATGCACCGAATGTCCGTATGAGACGAATAGCAAGTCTCAGTTTATGTATCACGAACAATTTCATCGTCTCCCGGCTGACACTCCATATAAATGTCAAGAATGCAATTACAGTGTATCGAAGAGGCATTTGCTTCATCAGCACATGCGTGTTCACGGAATATTTGCAAAGAAGAACGATATGGAAACTGACTTCGAAAGTACGCCATGTAATTCTAATCAAATAGATTCGCAAAGTGATTTTTCCATAAACCTTGACGAAATTCCGTTTGTATGGGTATCGGCGAAAAATGAATTTCACAAAATGTATAAGTGTCGATATTGTTCTTACGTAAAttcacaaaaatgtaaaattccaAACCACGAAAAAATACACTGTGTAGTATTTGAAAATAGTgacattacaatatataaatgtcttGAATGTAAATTTACTTGTGATAATAGGGGAAGATTAGCTGAACACTCCAAAACTCACGGAGAAATATACGGGCGTATTTACTGTCCAGTAGAGTATGATATTCCAGACGAGGAGCAGATAGCTAAGTTACGTAAAGTTATTGATCAAGATAAATTGAATGCTACGGACGAATTATTAAAAGACgaagaaaatcaaaatgaaattaaagaaaccaaaactttatatttctgtCAAAAATGTCCAGCAAGGTTTTTTGCTGACAGTGAACTAAAAGTTCACGACAAGTTTCATGATTTAACATTCCAGAATAAATGTAAGAGCTGTGAATTCTCCGTGCCCCAGGAGAATGAATTAGTTCCGCATAACTCTGTACATACCGatgaatataatacaaaaacaaaaatgcttaaatttgTTCACAAAATACATGCTTTGTATAAAGATccaaaattacaatttgttcACTGTCCGCTAACTTCGGACGTGACTTGGGTCGTCGCTAACCCaggtaaaaattatgattatagcGATTTAATAAGGAGATCGGAAACAAAACACACACCTAAACAGTATTATTGCAAGGAATGTCCAgctaagttttttaaaacctCTGCTTTGAGCTATCATGTGGGGCTACATGGGAGTGATGGTGAccataaatgtaaaaactgTAGTTATGCGGTTAAAAACCTCGGAAATCTAGCCAAACACGAGCTCTTACATGAAAATGAACCTAAAGCTTCCACCTGTGATTACGAATCGGGAGAAGATatggattataaaaatattcccttATCGGGCACTGATTTGTTTCAAAGGAAGACTGAAGCCCAGAAAAGAGTTTTAACGGACAAAGATAAACTCGTGAAACCTAATGATCACTTCCCCCCTGTCCTACAAGCTGATCCACAATTTGGTTATTTGATGCATGGAAATCCAGAATTTATATACCCTACATACCTCAAAAATGGTCggcaaaaagaaaaacgttATAAATGTCACAAATGCCCATCTGCATTTGAAAAGAgagaacaatataaaatacatttatctcTACATGGATCGAAACAAAGGTACAAATGTGAAATTTGTGACTACtctgttaaatattatgcCAATTATGTACAGCATATGAGAAAACACCAAATGAACGATGAAGCGCAAGCCGAAAGGAAGAAAGGTGTTAACGGTTTCACAGAAAACGAATCCGAAAACACTGTAAATAAAAGAGATGATAGCggtgataatattaaattagccaTCAAAACTATGCCTAAGAGACCGGTGCGGAGCGATTTTCAACAATTTTCTATAAGTGACCAACAAACTCTTAGGTTACTACAGCGTCGTCGCTCaatgaataaaaatgcaaaagaGGGTAACATATCCGAACTTTCTCCTACCAAAGACCGGAAAATGCATACGTGCATTTTTTGTCCCTACACTAATCAACGTCAAGATGCCCTCAATAACCACTACCGGCGACATGATGATTCATATGTATTAACCAGCGGTAATCATAAATGTTCGTACTGTGATCTAGTAGTAGTACAATCACATTTCCTTCGggaacatttaaaaacacattttagtTATCAGAAAAATCTAAGCCCTGAATGTTTCGTGGCCAAcgaaaatgttacttttacgATCACCAAGTTAGATGTGAGTGAACCAACTCAGGACTtcaaattagatatattaaatcaaaGTAAACTGTGcaatggaaataaaacatttgttaaaattaaaacaggtGAACTGTGTGTCgaataa
Protein Sequence: MGLQYMEKETISCNSDSNDASTSDFGRKDNMQITNETDVNFLSEDVKNQKQSRKIPRPIPQLIPLNASTPNQSKTSGEPPSKKLKESAQSPEVNNAQKIDNLPIDISLTPVSNSTSKDVCVRKKNESFFDRLKERLLTETGEEGSLICKNCGFESKCLSEHSVHEKNCTSLSNRQLTNSLHSSLGSTRCQNCRHRCKSSADLYIHMQSCKKKDVIQEITSEVHNQDSSEAVAINSEKEVEPHPMENVVFVWNNISHDTNKFDTPLDISINDDSTLPEQHRNFDSEIVDDNDAESMNLSPSQALGKKVFKCPYCLFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHAEAKVIMTDETGRRNYSKYNKFLAMPNLNENGENKFHYIDQSISADTVLDDEIFHDLNEGGNQPFEMPLNLQTQSLENKFEYDDRIFDAKKPKRTLWKCKKCNYKDSSKEALLEHVREHSKPDDGEEIRIPNNIHKKPDNMPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPESSSLSANEINSDTCTKCPFKATDKNMLLAHLQQHQPSPQSIFKCYFCPFFVKDEHELIQHLILHGITDPEDYISKAMGCKSPLPEQTHQNPLNSSSTKRHRCTECPYETNSKSQFMYHEQFHRLPADTPYKCQECNYSVSKRHLLHQHMRVHGIFAKKNDMETDFESTPCNSNQIDSQSDFSINLDEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCVVFENSDITIYKCLECKFTCDNRGRLAEHSKTHGEIYGRIYCPVEYDIPDEEQIAKLRKVIDQDKLNATDELLKDEENQNEIKETKTLYFCQKCPARFFADSELKVHDKFHDLTFQNKCKSCEFSVPQENELVPHNSVHTDEYNTKTKMLKFVHKIHALYKDPKLQFVHCPLTSDVTWVVANPGKNYDYSDLIRRSETKHTPKQYYCKECPAKFFKTSALSYHVGLHGSDGDHKCKNCSYAVKNLGNLAKHELLHENEPKASTCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCEICDYSVKYYANYVQHMRKHQMNDEAQAERKKGVNGFTENESENTVNKRDDSGDNIKLAIKTMPKRPVRSDFQQFSISDQQTLRLLQRRRSMNKNAKEGNISELSPTKDRKMHTCIFCPYTNQRQDALNNHYRRHDDSYVLTSGNHKCSYCDLVVVQSHFLREHLKTHFSYQKNLSPECFVANENVTFTITKLDVSEPTQDFKLDILNQSKLCNGNKTFVKIKTGELCVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01078702;
90% Identity: -
80% Identity: -