g12872.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- lolal
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000023.1:4307090-4309728[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-31 8.5e-29 100.4 0.0 1 99 21 115 21 118 0.95
Sequence Information
- Coding Sequence
- atGGGGGACCAGCAATTTTTCCTAAAATGGAACGACTTCCAGACGAATATGGTTACATCTTTTCGACATTTGAGGGATGAAAAAAGTTTTACAGACGTAACATTAGCTTGTGAAGGTCAGACGTGTAAGGCACACAAAATGGTGCTATCAGCATGTAGTCcatattttaaaagcttattAGAGgagAACCCATCGAAACAtcccataattatattaaaagatgtGTCATACTTGCACTTACAAGCGATACTCGAGTTCATGTATGCCGGTGAGGTTAATGTGTCCCAGGAACAGCTGCCGGCATTCCTCAAGACTGCTGCAAGACTTAAAGTCAAAGGCCTTGCCGAGCCGCCGCCACAGATGCCCAATATCAAGAGAGAAGGGTAA
- Protein Sequence
- MGDQQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLACEGQTCKAHKMVLSACSPYFKSLLEENPSKHPIIILKDVSYLHLQAILEFMYAGEVNVSQEQLPAFLKTAARLKVKGLAEPPPQMPNIKREG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00249793;
- 90% Identity
- iTF_01519421;
- 80% Identity
- iTF_00662337; iTF_01387713; iTF_00635522; iTF_01388610; iTF_01208387; iTF_00033924; iTF_00686468; iTF_01336036; iTF_01528421; iTF_00163078; iTF_01264806; iTF_01161480; iTF_01209416; iTF_00044617; iTF_00072937; iTF_00161673; iTF_00827113; iTF_01170697; iTF_00318188; iTF_00050061; iTF_00632877; iTF_00926734; iTF_00361743; iTF_00896047; iTF_01171567; iTF_00634609; iTF_01386833; iTF_00213651; iTF_00267316; iTF_00649236; iTF_01341428; iTF_00250581; iTF_00856757; iTF_01172501; iTF_00207094; iTF_00212662; iTF_00147639; iTF_00737591; iTF_00390521; iTF_00825914; iTF_00913722; iTF_00377211; iTF_00942939; iTF_01385915; iTF_00661436; iTF_00204445; iTF_00925853; iTF_00033022; iTF_01529310; iTF_00055551; iTF_00063711; iTF_00206208; iTF_00818432; iTF_00935840;