Nrev030237.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344861.2:11587651-11590176[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.2e-08 2.2e-05 25.0 0.0 4 40 18 54 15 58 0.90
Sequence Information
- Coding Sequence
- ATGGTACGTACATATAAAAGACGTACAAATAGAGGTGCTTATGATAAAAATCAACTACGTGAAGCCGTATTAGCGGTCCGTAATGGCACGTTAAGTGGTTATAAAGCTGCACaagtatacaaaatacctaGAATGACAATAATGGACCACGTACATAGAAAAAGAAGCTCCAATATGATTGGGAGGAAAACCACTCTATCTTCCGAAGTTGAATTGAATCTTGCATCCTGTCTTCATATTATGGAAACAAATGGTTTTGGATTGACAAGGGCAGAAGTGTTAGATATGGTTGGacaatatattaaacaaaataatataccatCATCATTTAAAAATGGGGTACCAGGAAAAGATTGgtttgtttcatttttaaaacgCCATCATTTATCGATTAAAAAACCGCAAGCGGTTGAGTATGCTCGAAAAACTGCAATAGATCCGTATATCGTTTTTCCATACTTTGATCTCTTAGAAAAAACtataaaagaattaaatttacaaaataaacctCACGCGATCTGGAATTTGGACGAAACAAGCTTCTCGAAAGACccatcaaaaacaaaaatagttggAGTTAAAGGCTATGCAGCTACTAGGGTGATTGCAACGCCTGGCAAAGATAATACAACGGTTCTTCTGGGTGCTAGTGCGGCTGGACAAAAAACACCACCACTcatcatttttaaaggaaaaaacGTATGGGATGAGTGGACTTCTCCAGACGCTTATCCAGGTACAACATATGCCGCCACTAAGAATGGCTGGATGGAGTCCGAAGTATTTgaggcattttttaaaaaaacttttttgccaACCATCGGCAACCAACGTCCAGTACTTTTGATATATGACGGCCACTCTACACATGTTGgattaaatataatagaagaAGCTCGCAGAGCTAACgtaactatattaaaaataccggCTCATACCAGTCACGTCTTACAACCACTGGATGTTTCAGTGATGAAAtcctttaaaaatcaatgggaTATAACGTTAGTACATTGGCAAAGACTAAACGTTGGTAAGCCATTACCAAAAAAGGACTTCTCTAGATTGATTGGATCTATATGGACAAAAATAAATCCTCAAGTGTTACGAAATGGGTTTAGAAAGACAGGAATTTATCCAATAAATCGGAATGAAATCGAAGAGCGGCTATTCGATCCATTACAACTAAAACGTTGGCAACAGTATTTATTAAACCTGCCTACACAATCGAAAAAGGAACCCCAAAAGTTATTAGGCATCACTCTTAACTgtattaataactatttttgtCGTAATGAACAAGGAAATTTATCGATAGATTTAGCCGAAGATAATAAAATGTCTTTTGAAGAGCTACTGCTCTTAAAAGTAAAGCGCAGCGAAAATGTATCCAAACCAAAGAGACGAAAAGTGGCACCAGGCGCAGAAGTAATTACTCACGACGACGTACTCAAGTTCAAAAAGGACGAACaaaatagtaagaaaaatataaaaagtaaaatacattCTAATCTGACGAAGAAAAACACAGATGATGTAGTTCTGTTAAGTCATTTATCAAGGGACAACTCTCAGTCGAAACCTTTTACCGCACTTAATTCCCAGGATCTGCCTGATTGTTTTCAAAATCACGAACTTGACACTCCAAAAGTTAAAATATCATCCAACGTAATTATAAAAGCTGCAACCAAACCAGATGAGGATCATATAAAACCAGGACCTTCAGGATTAAAACCTACAAgcaaaactaaaactattaatCAAACTGCTAGCTTAATACAGATTTctgcaaataaaatagtaaagacATCAATATATAAAGGAAAAGGAATTGGCAAGAAGAGTAAGGGAAAAGAAAACAAAGAACTTCACCTGGAAAATACTGATGACAATTTGCACCATTGCAAACGCgcgaaattaataaaaagaaaaaaacaaatttctcgATCTAGTTCAACCACCAGTGTCTCTGGATCGTGTAGCATCCATAGTGATTCTGATATAGTAAATGTAAGTTCTGATTATGAATATAATGACGATGTATTTTTGGATAGTATGCTAATGAAAGTACCTGATTTTGAGATTCATTCACATGACTCACAAAATCAGGTCTCAAAAATAGAATGTAACGAAGAGACTGAAATGAATAAGGCTAAAAATAGTAGTTTAAGACTCAAATTAAGGAATAAGcgtaatattactaaaaatgATATGAACTTCAACACAACTAAACACGTATATTCTGTCAATGACCATGTTTTAGTAAGGTACTATAACAGGAACAAGTGGACGTACTATGTTGGCATTATAGAAAATCATTATATTCAAGGTGGAGAGATTTATTACTCTGTCAGATTttataaaaccataaaaaaaccgAAGCTTTTGTTTAAAATGACTAAAAGAGTTGATCAAGATAATGTTCCAGATGAATCAATCGTTAAAAAGGTCAATTTAAACAATGATGAACAAATGTTTAATGGCTTGGTTTTGTCTTGTGAAGATGATGAGctctattttaattaa
- Protein Sequence
- MVRTYKRRTNRGAYDKNQLREAVLAVRNGTLSGYKAAQVYKIPRMTIMDHVHRKRSSNMIGRKTTLSSEVELNLASCLHIMETNGFGLTRAEVLDMVGQYIKQNNIPSSFKNGVPGKDWFVSFLKRHHLSIKKPQAVEYARKTAIDPYIVFPYFDLLEKTIKELNLQNKPHAIWNLDETSFSKDPSKTKIVGVKGYAATRVIATPGKDNTTVLLGASAAGQKTPPLIIFKGKNVWDEWTSPDAYPGTTYAATKNGWMESEVFEAFFKKTFLPTIGNQRPVLLIYDGHSTHVGLNIIEEARRANVTILKIPAHTSHVLQPLDVSVMKSFKNQWDITLVHWQRLNVGKPLPKKDFSRLIGSIWTKINPQVLRNGFRKTGIYPINRNEIEERLFDPLQLKRWQQYLLNLPTQSKKEPQKLLGITLNCINNYFCRNEQGNLSIDLAEDNKMSFEELLLLKVKRSENVSKPKRRKVAPGAEVITHDDVLKFKKDEQNSKKNIKSKIHSNLTKKNTDDVVLLSHLSRDNSQSKPFTALNSQDLPDCFQNHELDTPKVKISSNVIIKAATKPDEDHIKPGPSGLKPTSKTKTINQTASLIQISANKIVKTSIYKGKGIGKKSKGKENKELHLENTDDNLHHCKRAKLIKRKKQISRSSSTTSVSGSCSIHSDSDIVNVSSDYEYNDDVFLDSMLMKVPDFEIHSHDSQNQVSKIECNEETEMNKAKNSSLRLKLRNKRNITKNDMNFNTTKHVYSVNDHVLVRYYNRNKWTYYVGIIENHYIQGGEIYYSVRFYKTIKKPKLLFKMTKRVDQDNVPDESIVKKVNLNNDEQMFNGLVLSCEDDELYFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00374009; iTF_00745601; iTF_00985963;
- 90% Identity
- iTF_00374009;
- 80% Identity
- -