Math010058.1
Basic Information
- Insect
- Mellicta athalia
- Gene Symbol
- -
- Assembly
- GCA_905220545.1
- Location
- HG992181.1:8271625-8274147[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-08 1e-05 26.5 0.0 4 40 18 55 15 59 0.89 2 2 4.7 2e+03 -0.0 0.1 25 40 745 760 744 762 0.91
Sequence Information
- Coding Sequence
- ATGGTGCGTACATATAAAAGACGTACAAACAGAGGTGCTTATGACAAAAATCAGCTACGTGAAGCCGTAATAGCAGTGCGTAATGGCACCTTAAGTGGTTACAAAGCTgcacaaatttataaaattccaaGAATGACAATAATGGACCacgtttataaaaaaagaagctCCAATATGATTGGGAGGAAAACCACATTATCCTCCGAAGTTGAAATTAATCTTGCATCCTGTCTCCATATTATGGAAACATATGGCTTTGGATTGACAAGGGCAGAAGTCTTAGATATGGTTGGagagtatataaaaaaaaataatataccttCATCGTTTAAAAATGGGGTACCGGGAAAAGATTGGTTTGTTTCATTTTCAAAACGCCATAATTTATCGATTAAAAAACCGCAAGCGGTTGAGTATGCTCGTAAAACTGCAATAGATCCGTATATAGTTTTTCCATACTTTGATCTTTTAgaaaaaactataaaacaattaaatttacaaGATAAACCACACGCGATCTGGAATTTGGACGAAACAAGCTTCTCGAAAGACccatcaaaaacaaaaatagttgGAGTGAAAGGCTATGCGGCTACTAGGGTGATTGCAACGCCTGGAAAAGACAATACAACGGTTCTTCTGGGTGCTAGTGCGGCTGGACAAAAAACACCACCACTAATCATTTTTAAGGGCAAAAACGTATGGGATGAGTGGACTTCTCCAGACGCTTATCCAGGTACAACATACGCCGCCACTAAGAATGGCTGGATGGAGTCCGAAGTCTTTGaagcattttttaaaaaaacttttttgccAACCATCGGCGACCAACGTCCAGTACTTTTGATTTATGACGGCCACTCTACACATGTAGGATTAAATTTAATAGAAGAAGCTCGCAGAGCTAACGTAACCATATTAAAAATACCCGCTCATACCAGTCACGTCTTACAACCACTAGATGTTTCAGTAATGAAGTCCTTTAAAGATCAATGGGATATAACGTTAGTACAGTGGCAAAGATTAAATGTAGGTAAGCCATTAGAAAAAAAGGATTTTTCTAGATTGATTGGATCTATATGGACAAAAATAAATCCTCAAGTGTTACGAAATGGGTTTAGAAAGACAGGAATTTATCCAATAAATCGGAATGAAATCGAAGAGCGCCTATTCGATCCATTACAACTAAAACGTTGGCAACAGTATTTATTAAACCAACCTACACAATCGAAAAAGGAACCCCAAAAGTTATTATGCATCGCTCTTAACTGTATTAAAAACCATTTTTGTCGTAATGAGCAAGGAAATTTATCGATTGATTTAGCTGAAGATAATAAAATCTCTTTTGAAGAACTACTGCTCTTAAAAGTAAAACGCAGCGAAAATATATCCAAACCAAAGAGACGAAAAGTGGCACCAGGCGCAGAAGTAATTACTCATGACGATGTGCTCAAGTTCAAAAAGGATGAACAAAATAgtaagaaaaatgtaaaaagaaaaatacagtctaatCTGACGAAGAAAAACACAGATGATGTAGCTCTGTTAAGTAATTTAGCAAGGGACAACTCTCAGTCGAAACCTTTTACCGCGCTAAATTCCCAAGATCTGCCCGATTGTTTTCAAAATCACGAACACACTCCTAAAGTTAAAATTACAtccaacataattataaaagctGCAAACAAACCAGATGAGGATCATATAAAACCAGGAACTTCAGGATTAAAACCTACAAGgaaaactaaaattattaatCAAAACGCTACTTCAATTCAGATTTCtgcaaaaaaattagtaaagaCATCAACATTTAAAGGAAAAGGAATTGGCAAAAAGAGTAAGGGAAAAGAAAACAAAGAACTTCACCTGGAAAAGACTGATGACAAATTGCACCATAGCAAACACGCGAaagtaataaaacgaaaaaaacaaaTTTCTCGATCTAGTTCAACCACCAGTGTCTCTGGATCATGTAGCAGCCATAGTGATTCTGATATAGTAAATGTAAGTTCCGATTATGAATATAATGACGATGTATTTTTGGATAAGTTAATGAAAGTACCTGATTTTGAGAGTCATTCACATCACTCACAAAATCAGGTCTCGAAAATTGAATGCAACGAAGAGACTGAAATAAATAAGGCTAAAAATAGTAGTTTAAGACTCAATTTAAGGAATAAgcgtaatattaataaaaatgatatgaaCCTCAAGACAACTAAAAACGTACTATATTCTGTCAATGACCATGTTTTAGTAAGGTACTATAACAGACACAAGTGGACATACTATGTTGGCattatagaaaataattatattcaaggTGGAGAAATTTATTACTCGGTCAGATTTTATAAAACCATAAAAAAACCAAAGCTTTtgtttaaaatgaataaaagagTTGATCAAGATAATGTGCCCCATGAATCAATAGTTAAAAAGGTCAATTTACACActgatgaaaaaatattaaatgcctTGGTTTTGTCTTGCGAAGATGAtgagatatattttaattaa
- Protein Sequence
- MVRTYKRRTNRGAYDKNQLREAVIAVRNGTLSGYKAAQIYKIPRMTIMDHVYKKRSSNMIGRKTTLSSEVEINLASCLHIMETYGFGLTRAEVLDMVGEYIKKNNIPSSFKNGVPGKDWFVSFSKRHNLSIKKPQAVEYARKTAIDPYIVFPYFDLLEKTIKQLNLQDKPHAIWNLDETSFSKDPSKTKIVGVKGYAATRVIATPGKDNTTVLLGASAAGQKTPPLIIFKGKNVWDEWTSPDAYPGTTYAATKNGWMESEVFEAFFKKTFLPTIGDQRPVLLIYDGHSTHVGLNLIEEARRANVTILKIPAHTSHVLQPLDVSVMKSFKDQWDITLVQWQRLNVGKPLEKKDFSRLIGSIWTKINPQVLRNGFRKTGIYPINRNEIEERLFDPLQLKRWQQYLLNQPTQSKKEPQKLLCIALNCIKNHFCRNEQGNLSIDLAEDNKISFEELLLLKVKRSENISKPKRRKVAPGAEVITHDDVLKFKKDEQNSKKNVKRKIQSNLTKKNTDDVALLSNLARDNSQSKPFTALNSQDLPDCFQNHEHTPKVKITSNIIIKAANKPDEDHIKPGTSGLKPTRKTKIINQNATSIQISAKKLVKTSTFKGKGIGKKSKGKENKELHLEKTDDKLHHSKHAKVIKRKKQISRSSSTTSVSGSCSSHSDSDIVNVSSDYEYNDDVFLDKLMKVPDFESHSHHSQNQVSKIECNEETEINKAKNSSLRLNLRNKRNINKNDMNLKTTKNVLYSVNDHVLVRYYNRHKWTYYVGIIENNYIQGGEIYYSVRFYKTIKKPKLLFKMNKRVDQDNVPHESIVKKVNLHTDEKILNALVLSCEDDEIYFN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01076411;
- 90% Identity
- iTF_00374009;
- 80% Identity
- -