Gspa025161.1
Basic Information
- Insect
- Globia sparganii
- Gene Symbol
- -
- Assembly
- GCA_949316385.1
- Location
- OX438671.1:12937650-12940172[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-09 3e-06 27.9 0.0 4 37 18 51 15 57 0.89 2 2 6.2 2.4e+03 -0.6 0.1 25 40 745 760 744 761 0.88
Sequence Information
- Coding Sequence
- ATGGTACGTGCATATAAAAGACGTACAAATAGAGGTGCTTATGATAAAAATCAATTAAGCGAAGCCGTATTAGCAGTGCGTAATGGCACCTTAAGTGGTTACAAAGCTGCACAAGTATACAACATTCCAAGAATGACAATAATGGACCACGTACATAAAAAAAGATGCTCCAATATGATTGGGAGGAAAACCACTCTATCTTCCGAAGTTGAAATTAAACTTGCATCCTGTCTTCATATTATGGAAACATATGGCTTTGGGTTGACAAGGGCGGAAGTGTTAGATATGGTTGGagaatatataaaacaaaataatataccttCATCATTTAAAAATGGGGTACCGGGAAAAGATTGGtttgtttcattttcaaaaCGCCATCATTTATCGATTAAAAAACCGCAAGCGGTTGAGTATGCTCGTAAAACTGCAATAGATCCATATATAGTTTTTCCATACTTTGATCTCTTAGAAAAAactataaaagaattaaatttaCAAGATAAACCACACGCGATATGGAACTTGGACGAGACAAGCTTCTCGAAAGAcccatcaaaaacaaaaatagttgGAGTGAAAGGTTATGCGGCTACTAGAGTAATTGCAACGCCTGGAAAAGACAATACAACGGTTCTTCTGGGTGCTAGTGCGGCTGGACAAAAAACACCAccactaataatatttaagggcaaaaacgtatgggatgagtgGACTTCTCCAGACGCTTATCCAGGTACAACATATGCCGCCACTAAGAATGGCTGGATGGAGTCCGAAGTCTTTGaagcattttttaaaaaaacttttttgccaACCGTCGGCAACCAACGTCCACTACTTTTGATTTATGATGGCCATTCTACACATGTTGGATTAAATATAATTGAAGAAGCTCGCAGAGCTAACATaactatattaaaaataccGGCTCATACAAGTCACGTCTTACAACCACTGGATGTTTCAGTGATGAAATCCTTTAAAGATCAATGGGATATAACGTTAGTACAGTGGCAAAGACTAAACGTAGGTAAGCCATTACCAAAAAAGGATTTTTCTAGACTGATTGGATCTATATGGACAAAAATAAATCCTCAAGTGTTACGAAATGGGTTTAGAAAGACAGGAATTTATCCAATAAATCGGAATGAAATCGAAGAGCGGCTATTCGATCCATTACAACTAAAATGTTGGCAACAGTATTTATTAAACCCACCTACACAATTGAAAAAGGAACCCCAAAAGTTATTATGCATCGCTCTTAACTGTATTAATAATCATTTTTGTTGTAATGAACAAGGAAATTTATCGATAGATTTAGCCGAAGATAATAAAATCTCTTTTGAAGAGCTACTGCTCTTAAAAGTAAAACGCAGCGAAAATGTATCCAAACCAAAGAGGCGAAAAGTGGCACCAGGCGCAGAAGTAATTACTCACGACGACGTGCTCAAGTTCAAAAAGGACGAacaaaatagtaagaaaaataaaaaaagaaaaatacagtCTAATCTGACGAAGAAAAACACAGATGATGTAGTTCTATTAAGTAATTTATCAGGGGACAACTCTAAGTCGAAACCTTTTGCCGCACTAAATTCCCAAGATCTGCCTGATTGTTTTCAAAATCACGAACTTGACACTCCTAAGGTTAAAATTACATCCAACGTAATTATAAAAGCTGCAACTAAACCAGATGAGGATCATATAAAACCAGGACCTTCAGGATTAAAACCTACAAGGAAAACTAAAATGATTAATCAAAACGCTTCTTCAATTCAGATTACTGCAAAGAAAATGGTAAAGACATCAACATTTAAAGGAAAAGGAATTGGAAAAAAGAGTAAgggaaaagaaaacaaagaactTCACCTGGAAAAGACTGATGACAATTTGCACCGTAGCAAACACGCGaaagtaataaaactaaaaaaacaaatttctcGATCTAGTTCAACCACCAGTGTCTCTGGATCATGTAGCAGCCATAGTGATTCTGATATAGTAAATGTAAGTTCAGATTATGAATATAATGACGATGTATTTTTGGATATGTTAATGAAAGTACCTGAATTTGAGAGTCATTCACATCACTCACAAAATCAGGTCTCAAAAACAGAATGCAACGAAGAGACTGTAATAAATATGGCTAAAAATGATAGTTTAAGACTCAAATTAAGGAATAAgcgtaatattaataaaaatgatatgAATCTCAAGATAACTAAAAACGTATATTCTGTTAATGACCATGTTTTAGTAAGGTACTATAACAGGAACAAGTGGACGTACTATGTTGGCattatagaaaataattatattcaagatGGAAAGATTTATTACTCTGTCAGATTttataaaaccataaaaaaaccgaagcttttttttaaaatgactaAAAGAGTTGATCAAGATAATGTGCCCGATGAATCAATCGTTAAAAAGGTCAATTTACACAATGATGAACAAATGTTAAATAGCTTGGTTTTGTCTTGTGAAGATGATGAGCTCTATTTTAATTAA
- Protein Sequence
- MVRAYKRRTNRGAYDKNQLSEAVLAVRNGTLSGYKAAQVYNIPRMTIMDHVHKKRCSNMIGRKTTLSSEVEIKLASCLHIMETYGFGLTRAEVLDMVGEYIKQNNIPSSFKNGVPGKDWFVSFSKRHHLSIKKPQAVEYARKTAIDPYIVFPYFDLLEKTIKELNLQDKPHAIWNLDETSFSKDPSKTKIVGVKGYAATRVIATPGKDNTTVLLGASAAGQKTPPLIIFKGKNVWDEWTSPDAYPGTTYAATKNGWMESEVFEAFFKKTFLPTVGNQRPLLLIYDGHSTHVGLNIIEEARRANITILKIPAHTSHVLQPLDVSVMKSFKDQWDITLVQWQRLNVGKPLPKKDFSRLIGSIWTKINPQVLRNGFRKTGIYPINRNEIEERLFDPLQLKCWQQYLLNPPTQLKKEPQKLLCIALNCINNHFCCNEQGNLSIDLAEDNKISFEELLLLKVKRSENVSKPKRRKVAPGAEVITHDDVLKFKKDEQNSKKNKKRKIQSNLTKKNTDDVVLLSNLSGDNSKSKPFAALNSQDLPDCFQNHELDTPKVKITSNVIIKAATKPDEDHIKPGPSGLKPTRKTKMINQNASSIQITAKKMVKTSTFKGKGIGKKSKGKENKELHLEKTDDNLHRSKHAKVIKLKKQISRSSSTTSVSGSCSSHSDSDIVNVSSDYEYNDDVFLDMLMKVPEFESHSHHSQNQVSKTECNEETVINMAKNDSLRLKLRNKRNINKNDMNLKITKNVYSVNDHVLVRYYNRNKWTYYVGIIENNYIQDGKIYYSVRFYKTIKKPKLFFKMTKRVDQDNVPDESIVKKVNLHNDEQMLNSLVLSCEDDELYFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01076411;
- 90% Identity
- iTF_00374009;
- 80% Identity
- -