Basic Information

Insect: Nowickia ferox
Gene Symbol: grau
Assembly: GCA_936446695.1
Location: CAKZFO010000112.1:1220136-1222012[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.15 15 7.3 0.2 3 23 254 275 253 275 0.94

2 9 1.6e-06 0.00016 22.9 3.1 1 23 308 330 308 331 0.96

3 9 0.0002 0.019 16.4 1.7 3 23 341 361 339 361 0.95

4 9 1.5 1.5e+02 4.1 0.1 1 23 369 394 369 394 0.90

5 9 0.018 1.8 10.2 0.7 3 23 401 421 400 421 0.97

6 9 0.27 27 6.5 0.2 3 23 431 454 429 454 0.80

7 9 0.038 3.8 9.2 7.1 1 23 459 482 459 482 0.97

8 9 6e-06 0.00059 21.2 0.4 1 23 487 509 487 509 0.97

9 9 0.00031 0.03 15.8 2.5 1 23 515 538 515 538 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.15	15	7.3	0.2	3	23	254	275	253	275	0.94
2	9	1.6e-06	0.00016	22.9	3.1	1	23	308	330	308	331	0.96
3	9	0.0002	0.019	16.4	1.7	3	23	341	361	339	361	0.95
4	9	1.5	1.5e+02	4.1	0.1	1	23	369	394	369	394	0.90
5	9	0.018	1.8	10.2	0.7	3	23	401	421	400	421	0.97
6	9	0.27	27	6.5	0.2	3	23	431	454	429	454	0.80
7	9	0.038	3.8	9.2	7.1	1	23	459	482	459	482	0.97
8	9	6e-06	0.00059	21.2	0.4	1	23	487	509	487	509	0.97
9	9	0.00031	0.03	15.8	2.5	1	23	515	538	515	538	0.97

Sequence Information

Coding Sequence: atgattTGTTTTGTGTGCACAGaaaacgcaaatgaaactttatCAATATTTGAAAAGGATgatgtaaattcaaaaattgctACAATGATCGAAAAACATTTATATCTTAAGCCCCAAGTAAAGCAGGAAAAGCCTTTGGAAATATGTGTTAAATGTTGGGAAAAGCTTCGAGATTTTAAcgaattttttgaatttgttgCACAAGTTCATAATGAACAGAGAAAGTTGCTGCAAGAAttagttttagaaaatacagGTAGTGAGTATGATAAAAACATTTGGCACACCAATATAAAGATAGAGAATTTAGAGGAGACGTTGCGTGGAGACGATAATgtggaattaaattttattgaaacagGCGATACTTTTACTGAAAATCCTCTTTTAGATATAGAGTCGGAAGTGGAAGATAATTCGGaagaatttcaaaatataaGTGCTGCAACTGTGAAACCTAAAGCTATAAAATCTAAACgactcaaaaaaataataaaacgttCCAAAAGTTCTAAATCAAGCGATAGTGATGATGAAAACGAACAATCTTTGGCATCCCTTCTAGATGACATTAAAAATGAAGACAGCGATGAAATTTACCATCCAGAAGTAAGGAAAAAGAAGCAAAGAAGAAAAGTGCATCGAACTGAAACTAAGCTCTCAAAAAAAGTAGATAAACCGAATGAACCGAAACGTCGTAAAGGCCGTGTTTTATTAGAAGAAAATGAAAGCCTTATTAAGAAGCATATTAAAATGCTATGTCAAATGTGTTCCTATATAGGTGAcgatttttcaaatttgataAAACATTACAAAGACGAACACGCTGGTGTAAAGCCTTTTATAAAATGCTGTGAGCGTAAATTAGATTGTCCATCAGATATTTTACAGCATGCTTATTTCCATGAAGATCCTGAACACTTTAAGTGCCAAGAGTGtggaaaaacatttataaataacTCCGGCCTAAAAGACCATTTTATGAAGCATCACGAACCGGAAGAAAATCTTCCCTATGGCTGCGATGAGTGTCCGCGTcgattttcaagaaaaaatcttttggcTCATCATAAAGCAAAACATATACCGAAAACGGAAAGATCATACTTTTGTCAAATATGTGCACCACCCAAAGCatttgCAAGTGAGTACATACTACAGATTCACATAAAGTCACGCCATACGAAAGCCTCTAATATATGTCATGTGTGCGCAAAAGAAATACGAGATAAACAAGCTTTCGAAAAACATGTACGATTGCATTTCGAGACTAGTGGTCCACGTATTAAATGCCCCCGAGAAGGTTGCGAAAGTTGGCTTAAAGATGAGGATAATTTGAAACAACACTTAAGACGCTTCCATAACCAATCTAAATACGAGTGCCCTGAATGTAGCCGCATATGTAAAAATAAGCATTCTTTAACATGCCATTTAAGAAATACACATTCCACGCAAATCTTTACATGCGAAGAATGCCAAAAGAGCTTTAAAAGCGCTTTATCTttaaagGAGCATATGGCTGGTCACACGGGAGAACCTCTATACAATTGCCCATTTTGTACGAGAACTTTCAATTCCAAGGCAAATATGTACTCTCATAAGAAAAAAGCTCATCCCATAGAATGGGATTTAGTTCACAAATCAAAAATGGGtttcatataa
Protein Sequence: MICFVCTENANETLSIFEKDDVNSKIATMIEKHLYLKPQVKQEKPLEICVKCWEKLRDFNEFFEFVAQVHNEQRKLLQELVLENTGSEYDKNIWHTNIKIENLEETLRGDDNVELNFIETGDTFTENPLLDIESEVEDNSEEFQNISAATVKPKAIKSKRLKKIIKRSKSSKSSDSDDENEQSLASLLDDIKNEDSDEIYHPEVRKKKQRRKVHRTETKLSKKVDKPNEPKRRKGRVLLEENESLIKKHIKMLCQMCSYIGDDFSNLIKHYKDEHAGVKPFIKCCERKLDCPSDILQHAYFHEDPEHFKCQECGKTFINNSGLKDHFMKHHEPEENLPYGCDECPRRFSRKNLLAHHKAKHIPKTERSYFCQICAPPKAFASEYILQIHIKSRHTKASNICHVCAKEIRDKQAFEKHVRLHFETSGPRIKCPREGCESWLKDEDNLKQHLRRFHNQSKYECPECSRICKNKHSLTCHLRNTHSTQIFTCEECQKSFKSALSLKEHMAGHTGEPLYNCPFCTRTFNSKANMYSHKKKAHPIEWDLVHKSKMGFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01177301;
90% Identity: iTF_01398955;
80% Identity: -