Nfer003971.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000027.1:4963639-4974302[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 7.2 7.1e+02 2.0 1.8 3 20 60 77 58 79 0.92 2 19 0.029 2.9 9.5 1.9 2 23 240 262 239 262 0.92 3 19 0.0019 0.19 13.3 0.7 2 23 322 343 322 343 0.96 4 19 0.019 1.9 10.1 1.1 1 23 420 443 420 443 0.97 5 19 2.1 2.1e+02 3.7 1.4 3 23 452 472 450 472 0.91 6 19 0.028 2.8 9.6 0.2 2 20 532 550 531 553 0.94 7 19 0.056 5.5 8.6 4.4 3 23 628 649 626 649 0.95 8 19 0.01 1 11.0 0.4 1 22 656 677 656 677 0.95 9 19 0.0021 0.21 13.1 7.3 2 23 745 766 744 766 0.96 10 19 0.0035 0.35 12.4 0.1 2 20 793 811 792 813 0.93 11 19 0.00038 0.038 15.5 4.9 1 23 859 882 859 882 0.97 12 19 0.009 0.89 11.1 0.7 1 23 919 942 919 942 0.97 13 19 1.5 1.5e+02 4.2 0.2 2 23 1002 1022 1001 1022 0.92 14 19 0.0088 0.87 11.2 2.0 1 23 1028 1051 1028 1051 0.98 15 19 1.2 1.2e+02 4.4 0.6 5 23 1090 1108 1089 1108 0.91 16 19 2e-05 0.0019 19.5 2.1 1 23 1114 1136 1114 1136 0.99 17 19 0.00022 0.022 16.2 3.2 1 23 1142 1164 1142 1164 0.99 18 19 0.00023 0.022 16.2 3.1 1 23 1170 1192 1170 1192 0.96 19 19 0.0096 0.95 11.1 1.8 1 22 1198 1219 1198 1222 0.90
Sequence Information
- Coding Sequence
- ATGACGAATGAATGCTTTATAAATGGAGTGCAGTATAAATGTCGTACTTGCTTCGATCCCGCAACAACAGTATATCTACTTGCAGAAGAGTGCAACAACTACAAAGCTTGTCAAGATTTATTGAATGACATTGTTAAGTTAAAGACAAACGACGACGAGTTACTTCCAAAGACGATTTGTtcgaaatgtttaaaaaaactcGTCAGCTGCTACGATTTTATACTTCATATTCATAATGTGAATGAAAAGTACCACCAACTCTTGGAAAGTCGCAAAGATTCTTCTGGAAATGATGGTCTTGCCAGCAGCTCTAGGAATATTACAGAACGTTTGGCAGAATCTGTAACTACATTGCCTTTGGATCAGTATGTTTCGAAAATTAAGTTTGAAGACGAGTTCCTCATGTCTTATGATGTTGTCTTAAATAGCGACGATAGAAGAAACGATTCGGTCAAAGAAGATACTTATGACGCTTATATGGAACATTTGAAGGAGGATATTGAGCTCTCTACAGATAAGTTGGAATACCAACGAAGatcCCTAAATGAAGAAATAAATCAAGTTCTTGTAGATGATGTCAACGATTACGATTCCGAAAACAGGTCCTCATCCTCCAGTGATAGTGAACAAGACCTGCCCAATAGTCAAACATTCGGAAAGGAATCTGAAGAACACTTCTCCAAATACTATCCAATCGAAAAAGTCAACGGTCATATCGTATGTGGGATGTGCAAAAAATCATATAATAAGAAGAGTTCTTGTCGGAGACATATAATTGCAATGCACTACGAAGAAAAATCGTTATCATGCGGATTTTGCTGCATAAATGTGAGACATAAGCACACCTTAATTTCACATATTGAAGCTATACATCCAGGCGAGTCACATGATTCCAATAAAAAGCAATTAGGTCGTTTATTTGGAGAACGTCTGTATAGCAAACCTCTGCTATTACCACGAGCAGAATGTAAGCTATGTGGCTCTACTTTTATGACTAAAAAACAACTACTTCAGCACTTAGATATTCATAGTGAGGTCAATACTCTTCACAGCTTAAAATTAAGCAGTGATGTTAGTCAGCGTTGGTTTCCAAATATGAGGGCTTTGGCAGTCATAAAAACAATGATATGTCAAGATATTCGAGAGAAGAACTTTGTCAaatattacacaattttaaatgacTTTTCCTATGAAATGTCCATTAGTGATACGGATGCAGAAGATTTGGAAGAAAAAACAGAAGTGCCTTCCAACAAATATAAATGCGAATTGTGTGAAAGAgattttttgtacaaatatcAAGTGTTTGCTCATATGAGAGAGAAtcatttaaacgaaaaaaatcctTTGAAATGTATCCGTTGCAAGTTGGAATTTATATCTACAAAAATGTATGAACAACACAGGCAAACTCACTGTCGACATGAACATAAATTACTGATTTGTCCCAATTGTCCTGGCAAGTTTGTTTGGCTCGAAAATATGCGAAAACACAATTGTGTTACGAAAATATTGGATATTAAGAAATCTTTAAATGATAAAATTAGAGAAAGGTATAATGAAGTAACACGTTCTTCGCCAAAAACTGTCATAAGATGTGGTCTTTGTGAAATGACCTTTGAAAAGCTGCGAGACTTACGACAGCACATGCCTTTGCACGCCGATGGCAAAACTGGAATTGACTTTAATGGTTGTATTTATGTAAATCAATTTGAACATTTATCCGACAATTGCGAATTGTTGGAACAGAagattaaaaatgcatttaccAAACACCAAATAAGTCAACTGTATCAAGCCATCGATAAGAACGGCAAAGAAATGGACATTTCCGATTCGGATACCGATGAAGATGATGTTGATGGTGATAAAAGTTGTTTGTGCGAACTCTGCTATGAAACGTTTAAAAAGCGAAAACTGCTGTTTAAtcatcaaaaagaaaaacacaaggATGTTTCAATGCCCTTCACTTGCAAGGAATGTAAAATGCAATACGTTAGTATTGATTTGTTACAACAACATTTAAAGAGGGAATGTTGGAATGAACATCGAAGAGTTGCTGAGCAATGCGATTGTTGTAAAGAGCGTTTTATATGGCCGGAAAACATGTTGAGACATAGAGAAATACAGCGATACACAAGTATCAAAAATTCGCTTTCTGAAGACTTGTGTCGTACCAAGACAAAGAAAACGATGGCTTCATCAAGCTCAATTGACAATAtcaaaatttgttattgtttcgtATGTCCTAAAACATTCTGTAATACTGACCATTTAAATGATCATTTGATGCGCCATCGGTTAACACCATCCATCATCAAAACTGTTGCAAGCACAATACACTCCATATGGTGGCCAAATGGCAGAAAGATaatcaaatgcaaaatatgtaaTGAAGTATTTTCAAGTATTGCCAAATTAAATGAACACTACTCTCTAAAAAATCTGAAGAACGTGTGTGGTGCCATGCAACATTCTCTGTCAAATTACTCGGTTACTAATCAAATGGGGTTTGAATTACATTTAGAGCTGGATTCAGAAACAGAAActgaagaaaatgaaaatatattgccATATGCATGTTGCATATGTAGTAAATCATTTAAGCGAAAGTTTCAAATAACTCAACATCAAAGATCCATGCACAATTATGaaatgttggaatttaaatGTGAACGTTGTGTTTTCAGAACTGTATCACAGAAAGTTTTAGATTATCATAGAATGAGTCAGTGTTTTGATGTTGAGAAAAAATACCAATGCGATCAGTGTAATTTCAAATTTATGTGGCAAGAGAACCTCGAACAGCATATTTCGATATTTCATAATTCAAACGTTTTCTTCAAAACATTGGATGCAGCCAACACGTCGTTTTTAAATGACGCAAGCAATATAAGCGCTCAATGCcttcaattaaaagaaaattcacAGAGTGATTTGTCATTAGCATTACATCAAAACTATTCAGATGCAGGGGAGTGCATTCAATCTAAAGATACAATACAATGTCTAATTTGTGGAATttacattaacaaaaattattattcagaACATATTAGGAGAcacaaatgtgacaaatcttacAAATGCACTTTTTGCGAATTGGTTTTTTTAACACGTGCCTCTTTAAGGAAGCATAACCGCATGCGCCATAAACTTCATTCGGGTGAAAGTTCAAAAGgacaaaaaaagttattatcGACGTTGGAAAATAATTTGGACTCAACTGTTTCTACCCAACATCCACAAGTTACGAGAAAATTCAAATTATGTCCAATTTGTGGTGTCCATAGAAgaaatattgaaatacataTGAGAAGCCACATGGAAGAGACGCCATTCAAGTGCGATCTATGTGATAAAATCTGTAGcaccgaaattaatttaaatgtgcATCGGCGCACACACTCTAGTAAACGTCCTTTTAAATGTACACTTTGTGAGAAAGACTTTATCCATGAATTCAGATTAAAAGCTCACATGCGCTCTCACACTGGCGAGCGTCCATACGAGTGCACTGTTTGtcagaaaaaatttatcaacttGACAAATTTGAAGCATCATTCACTTAATCATACCGGCAAGAAATCCTTTATATGTGAGATTTGCAATCGAGCCTTTAAATGTGCCGAATATCTCAAAAGACATCGTATCAGAAAGGGCCATCATTcagaaaataattga
- Protein Sequence
- MTNECFINGVQYKCRTCFDPATTVYLLAEECNNYKACQDLLNDIVKLKTNDDELLPKTICSKCLKKLVSCYDFILHIHNVNEKYHQLLESRKDSSGNDGLASSSRNITERLAESVTTLPLDQYVSKIKFEDEFLMSYDVVLNSDDRRNDSVKEDTYDAYMEHLKEDIELSTDKLEYQRRSLNEEINQVLVDDVNDYDSENRSSSSSDSEQDLPNSQTFGKESEEHFSKYYPIEKVNGHIVCGMCKKSYNKKSSCRRHIIAMHYEEKSLSCGFCCINVRHKHTLISHIEAIHPGESHDSNKKQLGRLFGERLYSKPLLLPRAECKLCGSTFMTKKQLLQHLDIHSEVNTLHSLKLSSDVSQRWFPNMRALAVIKTMICQDIREKNFVKYYTILNDFSYEMSISDTDAEDLEEKTEVPSNKYKCELCERDFLYKYQVFAHMRENHLNEKNPLKCIRCKLEFISTKMYEQHRQTHCRHEHKLLICPNCPGKFVWLENMRKHNCVTKILDIKKSLNDKIRERYNEVTRSSPKTVIRCGLCEMTFEKLRDLRQHMPLHADGKTGIDFNGCIYVNQFEHLSDNCELLEQKIKNAFTKHQISQLYQAIDKNGKEMDISDSDTDEDDVDGDKSCLCELCYETFKKRKLLFNHQKEKHKDVSMPFTCKECKMQYVSIDLLQQHLKRECWNEHRRVAEQCDCCKERFIWPENMLRHREIQRYTSIKNSLSEDLCRTKTKKTMASSSSIDNIKICYCFVCPKTFCNTDHLNDHLMRHRLTPSIIKTVASTIHSIWWPNGRKIIKCKICNEVFSSIAKLNEHYSLKNLKNVCGAMQHSLSNYSVTNQMGFELHLELDSETETEENENILPYACCICSKSFKRKFQITQHQRSMHNYEMLEFKCERCVFRTVSQKVLDYHRMSQCFDVEKKYQCDQCNFKFMWQENLEQHISIFHNSNVFFKTLDAANTSFLNDASNISAQCLQLKENSQSDLSLALHQNYSDAGECIQSKDTIQCLICGIYINKNYYSEHIRRHKCDKSYKCTFCELVFLTRASLRKHNRMRHKLHSGESSKGQKKLLSTLENNLDSTVSTQHPQVTRKFKLCPICGVHRRNIEIHMRSHMEETPFKCDLCDKICSTEINLNVHRRTHSSKRPFKCTLCEKDFIHEFRLKAHMRSHTGERPYECTVCQKKFINLTNLKHHSLNHTGKKSFICEICNRAFKCAEYLKRHRIRKGHHSENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01398800;
- 90% Identity
- iTF_01074750;
- 80% Identity
- -