Nfer003808.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000027.1:1918592-1929608[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 3.7e+04 -15.2 21.1 47 112 8 70 1 168 0.75 2 4 0.053 1.9e+03 -1.2 5.5 21 73 220 270 216 305 0.58 3 4 5e-116 1.8e-111 373.2 27.5 1 299 348 644 348 645 0.93 4 4 0.07 2.6e+03 -1.6 3.7 220 245 673 698 648 719 0.47
Sequence Information
- Coding Sequence
- ATGTCAGTGGAACAAAAAGTAACTGATAAAAATGTTGTATCTACAACAACATCGACGACAACCGCAAACTCGGGTTCAACCAAATCTAATAAAAAGaaccaaaacaacaacaacaacaacaagagtagtaagaaatttattaaaaaagcattgaaaatttcaaaaactaaaaagcatGCAAACATTACTAATGCCAACAACAAGAACAGCGACACTACCAACTGTAGCAGCGGCAACAGCAACTGCGGCAACAACAATGTTGAAGTGGCAAACGATGAAATCATCGAGGAGTTGTTTGATTTTAGCGATAATGACCATATAAAAAACGAAGACGAAATTAGCAAGAACAATAGCAATTCAGCTGCTGGTGAAGAGCTTTTAACTGAAGGCAGCcataaattaaaggaaaatgAGGAGGTTGATAAAAATTCTGAGGTGCAATTGCAAAATAtgacaattaataataataccaATAATCAAAATAACGATGAAGCTGAAAGAAAAGAAGAACAACAGGTGGAACTAGTATTGTTATCTGCGCCAAATGATAACATTGATAAACAAAACGAAGACATCCCAAAAGACAATGAATTAGTCACGACGACAATTTCATCAATAACAAATAACATAATTAGCGTAGAAGGAAATGTGGATAAAAGCGAACTCGATAAAACTCAACAAGAAGTAGAATCATTTGAATCAGAAAAAAGCACAGAGAAAGAAGAAACTAACAATGTGCCGAGCAGCGCTTTCGTACAAATCTCCAATAGTTCCATTGTTAGCGAGCATTCATCGAGCTCTGGGGCTGACAACAATGGCAACAAATTGCCAACATCTTCAGACATAAAGTCTGTGAAAGCGAACGATGCTTCAGAATCGTCGTCGTTGTCTTTGATTGATATTAAAGAAGTTGCTTATGGCAAAGAAAATTGTAACAATAATCTAAATAATGCTGATGGcaatgatgatgaaaatgatgatgagtgTGCCGAACCATATGATGAACTCTTAGTGCAATTCCTCGATGAAGCCAATCAGATTgCTGAGGCTAGGTTAGCTGCTAGACGGCACGCTAGAGCAGAAGCTCGGGAAATACGTATGCGAGAATTAGAACGCCAGCAAAAGGAACAAGAATCTAATGCAGATCGTGTTTTCGATATGCATTCAACCGTAACTGGAATTACGCCACTGTCACACATGCGTCTAGGCTTGGGGAGTTCACCCGTTACAGGTTTACTAAATTCGACAAGAGCCAACTCCATGTCATCGAGACGCAGCAGTGAAGATTCTTTAGAAGAGGAAGGCCGTAGTTTAAGGGATATACGTCATGAGTTAAAGGATGTTGAAGAACGGTTTCGCAAGGCTATGATAGCAAATGCTCAGTTGGATAATGATCGTGCCTCACAAACGTATCAAATACAGTTGCTGAAAGACAAACTGGAAGATATGGAAGAATCATATTCACAATTACAGCGAGAATGCAAGGAAAAGACACGCGACTGCAATGCCTTGAAGCGATCATTGGATAAACTAAGCGAAGAGCTTAAATTGGTGCAGGGTCAGCTAAATGAGCGTGACACACTGATAGCAGAACAAGGTTTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCACTGTTGAAAATGCACAATTATTGGGCTCGGTACAAGGCTCATTAGATGTGCGGCTTAAGAAATTCAGCGAAGAGAAACAACAACTGCAGTCCGAAGTTCAGCAGTTGCAGGAACAATTAGAATCATATAAAAGTCAGGGCAAAGGTCGAGGTAAAGGCAATTCTTCCAATGGTCCTTTAGGCTcggatgatgatgattatgaaGCTCAAAgagAAGCCAATAaaatcataatggactataaatataaattacaaaaagctGAACAGGAAATTGCTAGTCTTCAATCAAGCTTAGCACGTTCTGAAACGCAGGTTATACGTTACAAAAGTACTGCTGAAGCTGCCGAGAAAGCTGAGGCCGAACTTAAAATCGAAAGAAGGAAACTGCAAAGAGAGAATCGCGAAGCAATGGAAAAGCTGGAAGAGCTAGAAACATCAAATAATCATCTTCTGAAACGTTTGGACAAATTAAAGAATGCCAAAAGTGCTTTACTAAAAGATCTCTGA
- Protein Sequence
- MSVEQKVTDKNVVSTTTSTTTANSGSTKSNKKNQNNNNNNKSSKKFIKKALKISKTKKHANITNANNKNSDTTNCSSGNSNCGNNNVEVANDEIIEELFDFSDNDHIKNEDEISKNNSNSAAGEELLTEGSHKLKENEEVDKNSEVQLQNMTINNNTNNQNNDEAERKEEQQVELVLLSAPNDNIDKQNEDIPKDNELVTTTISSITNNIISVEGNVDKSELDKTQQEVESFESEKSTEKEETNNVPSSAFVQISNSSIVSEHSSSSGADNNGNKLPTSSDIKSVKANDASESSSLSLIDIKEVAYGKENCNNNLNNADGNDDENDDECAEPYDELLVQFLDEANQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSTVTGITPLSHMRLGLGSSPVTGLLNSTRANSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAIENEDGTDAKRALVTVENAQLLGSVQGSLDVRLKKFSEEKQQLQSEVQQLQEQLESYKSQGKGRGKGNSSNGPLGSDDDDYEAQREANKIIMDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01399449;
- 90% Identity
- iTF_01399449;
- 80% Identity
- -